RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 MTNR1BP49286 362 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 VEGFCP49767 419 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ZNF836Q6ZNA1 936 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 NDUFAF7Q7L592 441 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 TECPR1Q7Z6L1 1165 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 C19orf47Q8N9M1 422 aaKnown RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 TMEM185AQ8NFB2 350 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 OR13H1Q8NG92 308 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RAB40AQ8WXH6 277 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SDF2Q99470 211 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 CDCA4Q9BXL8 241 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 GABARAPL3Q9BY60 117 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RGCCQ9H4X1 137 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ACKR4Q9NPB9 350 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 FBXL2Q9UKC9 423 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 TUBGCP6Q96RT7 1819 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 A6NIZ1 184 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 GAPDHSO14556 408 aaPredicted RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 HOXC11O43248 304 aaPredicted RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 PRKNO60260 465 aaPredicted RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 UBL3O95164 117 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 DIRAS3O95661 229 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RAB3AP20336 220 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 DAP3P51398 398 aaKnown RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 RAP1BP61224 184 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RAP1AP62834 184 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 LHX8Q68G74 356 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 PLPP6Q8IY26 295 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 KDM8Q8N371 416 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ARL14Q8N4G2 192 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 TMEM99Q8N816 258 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 IL17RDQ8NFM7 739 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 OR52N1Q8NH53 320 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SMAP2Q8WU79 429 aaPredicted RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 MAFIPQ8WZ33 124 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ZBTB8AQ96BR9 441 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SEC22AQ96IW7 307 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 TXNDC15Q96J42 360 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SAV1Q9H4B6 383 aaPredicted RBP11.73□□□□□ -0.53
USP53-209ENST00000514665 NRIP3Q9NQ35 241 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 FBXO8Q9NRD0 319 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 DAPP1Q9UN19 280 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 RTTNQ86VV8 2226 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ANKRD61A6NGH8 418 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 F8W036 122 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 CTSLP07711 333 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 HCCSP53701 268 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 BLOC1S1P78537 153 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 FAHD1Q6P587 224 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 Q6ZNB5 142 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 LINC00299Q6ZSB3 139 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 NLRP8Q86W28 1048 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 OR51D1Q8NGF3 324 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 CCL4L1Q8NHW4 92 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 HAVCR2Q8TDQ0 301 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SLC6A20Q9NP91 592 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 SUSD2Q9UGT4 822 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 ICKQ9UPZ9 632 aa11.73□□□□□ -0.53
USP53-209ENST00000514665 NUDT21O43809 227 aaKnown RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 HLA-AP01891 365 aaKnown RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 SBK2P0C263 348 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 OR8U9P0C7N5 309 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 GAAP10253 952 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 NID1P14543 1247 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SRP9P49458 86 aaKnown RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 ZNF546Q86UE3 836 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 OR7G2Q8NG99 324 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 OR5D14Q8NGL3 314 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SLC25A46Q96AG3 418 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SENP5Q96HI0 755 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 ULBP3Q9BZM4 244 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 GABARAPL1Q9H0R8 117 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 KIR3DX1Q9H7L2 352 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SPTBN2O15020 2390 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 TMEM129A0AVI4 362 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SLC33A1O00400 549 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 CD14P08571 375 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 DUSP3P51452 185 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 CAV2P51636 162 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 LIM2P55344 173 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 YPEL5P62699 121 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SORDQ00796 357 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 FAPQ12884 760 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 PARM1Q6UWI2 310 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 CD300LGQ6UXG3 332 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 GLB1L2Q8IW92 636 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 ZNF100Q8IYN0 542 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 ZSCAN1Q8NBB4 408 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 SFXN2Q96NB2 322 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 PLEKHJ1Q9NW61 149 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 COPS3Q9UNS2 423 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 ZBTB32Q9Y2Y4 487 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 SLC35E2P0CK97 266 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 ZNF14P17017 642 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 EN2P19622 333 aaPredicted RBP11.72□□□□□ -0.53
USP53-209ENST00000514665 CD22P20273 847 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 TUBG1P23258 451 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 CTF1Q16619 201 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 PRSS36Q5K4E3 855 aa11.72□□□□□ -0.53
USP53-209ENST00000514665 TMPPEQ6ZT21 453 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms