RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 TAS2R1Q9NYW7 299 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 NINJ2Q9NZG7 142 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PSMC3IPQ9P2W1 217 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 ARMCX3Q9UH62 379 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 GLS2Q9UI32 602 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 TRMT6Q9UJA5 497 aaKnown RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 SLC9A8Q9Y2E8 581 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ARL2BPQ9Y2Y0 163 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ACOT9Q9Y305 439 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PLLPQ9Y342 182 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 PRELID3BQ9Y3B1 194 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 MFHAS1Q9Y4C4 1052 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 REREQ9P2R6 1566 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 POLR3AO14802 1390 aaPredicted RBP1.49□□□□□ -2.17
NUP54-208ENST00000508604 NUP155O75694 1391 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ABCC12Q96J65 1359 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 KDM5BQ9UGL1 1544 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 ZNF518AQ6AHZ1 1483 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 SHANK2Q9UPX8 1470 aa1.49□□□□□ -2.17
NUP54-208ENST00000508604 HFM1A2PYH4 1435 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FAM135BQ49AJ0 1406 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FMN1Q68DA7 1419 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SERTM2A0A1B0GWG4 89 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RAB19A4D1S5 217 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 E5RI56 91 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NPIPA2E9PIF3 369 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF701M0R085 212 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 DNALI1O14645 258 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 AQP9O43315 295 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GMFGO60234 142 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GMDSO60547 372 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CST8O60676 142 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PFKFB2O60825 505 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CCDC22O60826 627 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 N4BP1O75113 896 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 BCAS2O75934 225 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 OR7A10O76100 309 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NOL4O94818 638 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LGI1O95970 557 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CSTAP01040 98 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 APOA1P02647 267 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FABP1P07148 127 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 PLEKP08567 350 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 IGFBP1P08833 259 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 HBQ1P09105 142 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GNAO1P09471 354 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 OR4E1P0C645 316 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 NQO1P15559 274 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CBR1P16152 277 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TCP1P17987 556 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 TNNI1P19237 187 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TCN1P20061 433 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 GABRR1P24046 479 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CXCR2P25025 360 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 S100PP25815 95 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 HOXA9P31269 272 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CD79BP40259 229 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 VHLP40337 213 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MAGEA1P43355 309 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 MAGEA4P43358 317 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CDKN1BP46527 198 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 YAP1P46937 504 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 NKX2-5P52952 324 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 NUP107P57740 925 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TAS2R60P59551 318 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 RPL27P61353 136 aaKnown RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 NAA20P61599 178 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 UBE2HP62256 183 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FKBP1BP68106 108 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CCZ1BP86790 482 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CCZ1P86791 482 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 CDK16Q00536 496 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 FLI1Q01543 452 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 RPA4Q13156 261 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ITIH4Q14624 930 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SMCO1Q147U7 214 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 POU6F1Q14863 301 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ANGPT1Q15389 498 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 UAP1Q16222 522 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 STX1AQ16623 288 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF829Q3KNS6 432 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 KCTD21Q4G0X4 260 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 GPAT3Q53EU6 434 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TNFAIP8L3Q5GJ75 292 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 C10orf120Q5SQS8 335 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SCYL2Q6P3W7 929 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 C5orf46Q6UWT4 87 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ARSKQ6UWY0 536 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 APOOLQ6UXV4 268 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 COPS6Q7L5N1 327 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 BHLHA15Q7RTS1 189 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 LINC00523Q86TU6 105 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LRP11Q86VZ4 500 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 SLC13A5Q86YT5 568 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 GID4Q8IVV7 300 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 LAX1Q8IWV1 398 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 TUSC5Q8IXB3 177 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 ZNF444Q8N0Y2 327 aaPredicted RBP1.48□□□□□ -2.17
NUP54-208ENST00000508604 PDIK1LQ8N165 341 aa1.48□□□□□ -2.17
NUP54-208ENST00000508604 CYP4Z2PQ8N1L4 340 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms