RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 VLDLRP98155 873 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 C6orf10Q5SRN2 563 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 PRAMEF8Q5VWM4 474 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 PRAMEF7Q5VXH5 474 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 NIPAL3Q6P499 406 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 CREB3L2Q70SY1 520 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 MAVSQ7Z434 540 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 EPHX4Q8IUS5 362 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 OR9I1Q8NGQ6 314 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 VPS33AQ96AX1 596 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 C3orf49Q96BT1 292 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 FBXO17Q96EF6 278 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 BOD1Q96IK1 185 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 SLC38A2Q96QD8 506 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 SPATA9Q9BWV2 254 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 RMND5AQ9H871 391 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 OBP2BQ9NPH6 170 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 TMEM45AQ9NWC5 275 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 ZIM2Q9NZV7 527 aa10.07□□□□□ -0.8
HMGCS1-204ENST00000507293 A0A096LPI6 279 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 A0A0G2JPF8 293 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 TMEM247A6NEH6 219 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 HNRNPCL2B2RXH8 293 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 HNRNPCL3B7ZW38 293 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 HNRNPCL1O60812 293 aaKnown RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 NPIPB7O75200 414 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 UPK3AO75631 287 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 VAMP5O95183 116 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 NUDT7P0C024 238 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 FAM157CP0CG43 387 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 HNRNPCL4P0DMR1 293 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 IGHV4-31P0DP07 118 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 USF1P22415 310 aaPredicted RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 POLR2JP52435 117 aaKnown RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 UBE2NP61088 152 aaKnown RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 SNRPD2P62316 118 aaKnown RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 TUBA1BP68363 451 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 TUBA4AP68366 448 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 HOXC5Q00444 222 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 ZSWIM7Q19AV6 140 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 SWI5Q1ZZU3 235 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 MST1LQ2TV78 715 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 ATG16L1Q676U5 607 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 MSANTD1Q6ZTZ1 278 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 TUBA1AQ71U36 451 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 LINGO2Q7L985 606 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 PHC2Q8IXK0 858 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 STK35Q8TDR2 534 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 PROX1Q92786 737 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 SORCS2Q96PQ0 1159 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 OR52B2Q96RD2 323 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 KCNK17Q96T54 332 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 KCNS3Q9BQ31 491 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 ARMC7Q9H6L4 198 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 SDR39U1Q9NRG7 319 aaPredicted RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 THUMPD1Q9NXG2 353 aaKnown RBP10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 CDC42EP3Q9UKI2 254 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 PRDM4Q9UKN5 801 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 ZNF232Q9UNY5 417 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 RASD1Q9Y272 281 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 FKBP7Q9Y680 259 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 MALRD1Q5VYJ5 2156 aa10.06□□□□□ -0.8
HMGCS1-204ENST00000507293 COL6A5A8TX70 2615 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 ATRQ13535 2644 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 A0A096LPE4 126 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 ARPC4-TTLL3A0A0A6YYG9 625 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 A0A1W2PPZ6 126 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 FTCDNL1E5RQL4 147 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 NR5A2O00482 541 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 UBDO15205 165 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 F12P00748 615 aaPredicted RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 PNMTP11086 282 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 GTF2E2P29084 291 aaKnown RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 RPS5P46782 204 aaKnown RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 PDLIM4P50479 330 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 LSM11P83369 360 aaKnown RBP eCLIP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 ROR2Q01974 943 aaKnown RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 RGNQ15493 299 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 ZNF311Q5JNZ3 666 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 CYB5R2Q6BCY4 276 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 SLC2A7Q6PXP3 512 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 MIER2Q8N344 545 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 KDM8Q8N371 416 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 MFSD8Q8NHS3 518 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 BCL2L2Q92843 193 aaPredicted RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 MAL2Q969L2 176 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 SLC25A36Q96CQ1 311 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 KATNB1Q9BVA0 655 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 PTDSS2Q9BVG9 487 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 LINC00470Q9BZP3 86 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 PAIP1Q9H074 479 aaKnown RBP10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 NELFAQ9H3P2 528 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 SEC61A2Q9H9S3 476 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 A4GALTQ9NPC4 353 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 CA10Q9NS85 328 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 TMEM160Q9NX00 188 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 NKIRAS1Q9NYS0 192 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 SEC14L4Q9UDX3 406 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 IFT52Q9Y366 437 aa10.05□□□□□ -0.8
HMGCS1-204ENST00000507293 FBN1P35555 2871 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms