RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 PRKCDQ05655 676 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 RASGEF1BQ0VAM2 473 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 PMPCAQ10713 525 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 COX10Q12887 443 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 SLC17A1Q14916 467 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 ZNF74Q16587 644 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 NRN1LQ496H8 165 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 IQCCQ4KMZ1 466 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 DEF8Q6ZN54 512 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 MBOAT2Q6ZWT7 520 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 OLIG3Q7RTU3 272 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 VTCN1Q7Z7D3 282 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 GALNT5Q7Z7M9 940 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 P2RY8Q86VZ1 359 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 CCDC36Q8IYA8 594 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 ACBD4Q8NC06 268 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 C1orf162Q8NEQ5 155 aaPredicted RBP7.56□□□□□ -1.2
PDGFC-205ENST00000506880 OR5M9Q8NGP3 310 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 OR5J2Q8NH18 312 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 ITLN2Q8WWU7 325 aaPredicted RBP7.56□□□□□ -1.2
PDGFC-205ENST00000506880 PRSS27Q9BQR3 290 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 PTDSS2Q9BVG9 487 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 RSPO3Q9BXY4 272 aaPredicted RBP7.56□□□□□ -1.2
PDGFC-205ENST00000506880 C8orf4Q9NR00 106 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 SLC7A8Q9UHI5 535 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 TMCC3Q9ULS5 477 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 COL12A1Q99715 3063 aa7.56□□□□□ -1.2
PDGFC-205ENST00000506880 IGKV1D-42A0A075B6H8 117 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 CPSF4LA6NMK7 179 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SMAD9O15198 467 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 IDH3BO43837 385 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 GADD45GO95257 159 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 BGLAPP02818 100 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 ZNF43P17038 809 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 GSTM3P21266 225 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 FPR1P21462 350 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RRM2P31350 389 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 UQCRFS1P47985 274 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 DAP3P51398 398 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 OR2B6P58173 313 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 ACTR3P61158 418 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RPS4XP62701 263 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 TGFBR3Q03167 851 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SRYQ05066 204 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 PUDPQ08623 228 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 C1orf146Q5VVC0 180 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 TMEM225Q6GV28 225 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 OR2T5Q6IEZ7 315 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 CD300LDQ6UXZ3 194 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 DPPA2Q7Z7J5 298 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 FJX1Q86VR8 437 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 COMTD1Q86VU5 262 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 UBQLNLQ8IYU4 475 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RNF148Q8N7C7 305 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 CLDN22Q8N7P3 220 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 OR10Q1Q8NGQ4 319 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 OR2T29Q8NH02 315 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 VANGL1Q8TAA9 524 aaPredicted RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 FNDC9Q8TBE3 224 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SMPDL3BQ92485 455 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RNASE6Q93091 150 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SGTBQ96EQ0 304 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 ARL5BQ96KC2 179 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SNX18Q96RF0 628 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 GPX7Q96SL4 187 aaPredicted RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SPOCK3Q9BQ16 436 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 FUZQ9BT04 418 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 WACQ9BTA9 647 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 BDH2Q9BUT1 245 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 LINC00470Q9BZP3 86 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 DENND2DQ9H6A0 471 aaPredicted RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 REEP1Q9H902 201 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 OBP2BQ9NPH6 170 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 DNAJB9Q9UBS3 223 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RNF6Q9Y252 685 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 HIF3AQ9Y2N7 669 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 RELNP78509 3460 aa7.55□□□□□ -1.2
PDGFC-205ENST00000506880 SETXQ7Z333 2677 aaKnown RBP7.55□□□□□ -1.2
PDGFC-205ENST00000506880 A0A0G2JNJ9 132 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 SH3PXD2BA1X283 911 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 ZNF716A6NP11 495 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 A8MXE2 369 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 RPL36A-HNRNPH2H7BZ11 118 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 FFAR1O14842 300 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 TNFSF13O75888 250 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 OR7A10O76100 309 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 OR6A2O95222 327 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 IGHMP01871 453 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 IMPDH2P12268 514 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 NCK1P16333 377 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 PSMB1P20618 241 aaKnown RBP7.54□□□□□ -1.2
PDGFC-205ENST00000506880 ATP6V1B2P21281 511 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 FPR3P25089 353 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 AGTR1P30556 359 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 KIR2DL2P43627 348 aaPredicted RBP7.54□□□□□ -1.2
PDGFC-205ENST00000506880 OR1E2P47887 323 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 OR3A2P47893 321 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 LIMS1P48059 325 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 P2RY4P51582 365 aa7.54□□□□□ -1.2
PDGFC-205ENST00000506880 ADORA2A-AS1P86434 159 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.7 ms