RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SQLEQ14534 574 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 ELOA3BQ3SY89 546 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 DHRS4L2Q6PKH6 230 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 NET1Q7Z628 596 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-214ENST00000496043 LSRQ86X29 649 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-214ENST00000496043 FBXL14Q8N1E6 418 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 ELOA3Q8NG57 546 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 CKAP2Q8WWK9 683 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 BOD1Q96IK1 185 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 ADAD1Q96M93 576 aaKnown RBP11.18□□□□□ -0.62
PTPRF-214ENST00000496043 HS6ST2Q96MM7 605 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 ZNF607Q96SK3 696 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 TMEM38AQ9H6F2 299 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 FKRPQ9H9S5 495 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 C12orf10Q9HB07 376 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 BARX1Q9HBU1 254 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-214ENST00000496043 VAPAQ9P0L0 249 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.18□□□□□ -0.62
PTPRF-214ENST00000496043 NAV3Q8IVL0 2385 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 VPS13CQ709C8 3753 aa11.18□□□□□ -0.62
PTPRF-214ENST00000496043 CADP27708 2225 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 NIPBLQ6KC79 2804 aaeCLIP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 PRORSD1PA6NEY8 169 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 SERPINB7O75635 380 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 PNMTP11086 282 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 CDH2P19022 906 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 PTNP21246 168 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 PAX7P23759 505 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 GTF2E2P29084 291 aaKnown RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 ACVR1BP36896 505 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 RPS5P46782 204 aaKnown RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 PPP2R2BQ00005 443 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 SCARB2Q14108 478 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 NRF1Q16656 503 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 NIPAL3Q6P499 406 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 KLHL24Q6TFL4 600 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 C5orf46Q6UWT4 87 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 EPHX4Q8IUS5 362 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 LSMEM1Q8N8F7 131 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 BHLHE22Q8NFJ8 381 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 DNAJA4Q8WW22 397 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 MAGEB18Q96M61 343 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 REG4Q9BYZ8 158 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 EVA1AQ9H8M9 152 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 VIPAS39Q9H9C1 493 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 TMEM27Q9HBJ8 222 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 OBP2BQ9NPH6 170 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 CBLN4Q9NTU7 201 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 SELENONQ9NZV5 590 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 LEF1Q9UJU2 399 aaPredicted RBP11.17□□□□□ -0.62
PTPRF-214ENST00000496043 SLC13A4Q9UKG4 626 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 B3GALT5Q9Y2C3 310 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 ATP23Q9Y6H3 246 aa11.17□□□□□ -0.62
PTPRF-214ENST00000496043 TRBV5-3A0A0A0MS03 114 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 A0A1B0GWA3 101 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 FTCDNL1E5RQL4 147 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 RNF223E7ERA6 249 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 ZNF587BE7ETH6 402 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 TPST1O60507 370 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 NDUFS7O75251 213 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 IGHV4-39P01824 125 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 ZNF43P17038 809 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 SELENOPP49908 381 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 EGR4Q05215 589 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 C1DQ13901 141 aaKnown RBP11.16□□□□□ -0.62
PTPRF-214ENST00000496043 RAB35Q15286 201 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 RUNDC3AQ59EK9 446 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 ZNF544Q6NX49 715 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 ULK3Q6PHR2 472 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 C6orf89Q6UWU4 347 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 DLEU7Q6UYE1 221 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 C10orf111Q8N326 155 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 KDM8Q8N371 416 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 MUC15Q8N387 334 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 STON2Q8WXE9 905 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 SLC38A4Q969I6 547 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 TAAR8Q969N4 342 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 KTI12Q96EK9 354 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-214ENST00000496043 SLC47A1Q96FL8 570 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 OXGR1Q96P68 337 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 PTDSS2Q9BVG9 487 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 RSPO3Q9BXY4 272 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-214ENST00000496043 LINC00470Q9BZP3 86 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 ARGLU1Q9NWB6 273 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-214ENST00000496043 GDF2Q9UK05 429 aaPredicted RBP11.16□□□□□ -0.62
PTPRF-214ENST00000496043 TRIM33Q9UPN9 1127 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 NDUFAF1Q9Y375 327 aa11.16□□□□□ -0.62
PTPRF-214ENST00000496043 AIM2O14862 343 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 BMP4P12644 408 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 HOXB1P14653 301 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-214ENST00000496043 PCSK6P29122 969 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 APOBEC3AP31941 199 aaPredicted RBP11.15□□□□□ -0.62
PTPRF-214ENST00000496043 CLDN17P56750 224 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 UBE2NP61088 152 aaKnown RBP11.15□□□□□ -0.62
PTPRF-214ENST00000496043 CHRNB3Q05901 458 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 SPOCK1Q08629 439 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 RBBP4Q09028 425 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 OR1Q1Q15612 314 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 ADRM1Q16186 407 aa11.15□□□□□ -0.62
PTPRF-214ENST00000496043 HIKESHIQ53FT3 197 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms