RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 C1orf94Q6P1W5 598 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 LAS2Q8IYD9 372 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 FAM26EQ8N5C1 309 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 SUSD2Q9UGT4 822 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 WRBO00258 174 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 SCGNO76038 276 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 TPOP07202 933 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 UBBP0CG47 229 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 UBCP0CG48 685 aaKnown RBP15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF35P13682 527 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 ACTBP60709 375 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 ACTG1P63261 375 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 KIAA1211LQ6NV74 962 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 APH1BQ8WW43 257 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 ASB6Q9NWX5 421 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 ABI3Q9P2A4 366 aa15.1■□□□□ 0.01
CCDC88B-209ENST00000494080 OPRD1P41143 372 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 CARD17Q5XLA6 110 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF440Q8IYI8 595 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 FAM160A2Q8N612 972 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 DIO2Q92813 273 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 PMM1Q92871 262 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SLC6A18Q96N87 628 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 EIF5A2Q9GZV4 153 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 TRIM64A6NGJ6 449 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 TRIM64BA6NI03 449 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 DCNP07585 359 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SYPP08247 313 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 CD22P20273 847 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 EPHA5P54756 1037 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 DGCR2P98153 550 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 KCTD18Q6PI47 426 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SCARB1Q8WTV0 552 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 EPHA6Q9UF33 1036 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 MBD1Q9UIS9 605 aaPredicted RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 V9GY05 133 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 LTBP1Q14766 1721 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 IFNA21P01568 189 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 PDX1P52945 283 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 TCTEX1D2Q8WW35 142 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 ARSGQ96EG1 525 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 DHCR7Q9UBM7 475 aaKnown RBP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SERGEFQ9UGK8 458 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 VDAC3Q9Y277 283 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 S1PR1P21453 382 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SOX18P35713 384 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 LSSP48449 732 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 TIAL1Q01085 375 aaKnown RBP eCLIP15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 CDONQ4KMG0 1287 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 TSSK4Q6SA08 328 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 SPRED2Q7Z698 418 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 RADILQ96JH8 1075 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 MRGPRX3Q96LB0 322 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 FN3KQ9H479 309 aa15.09■□□□□ 0.01
CCDC88B-209ENST00000494080 ACOD1A6NK06 481 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 H3BML4 177 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 ZNF616Q08AN1 781 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 PXT1Q8NFP0 134 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 OR13C2Q8NGS9 318 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 TMEM41AQ96HV5 264 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 BTBD2Q9BX70 525 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 C1QTNF2Q9BXJ5 285 aa15.08■□□□□ 0.01
CCDC88B-209ENST00000494080 SNAPINO95295 136 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 TRIM23P36406 574 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 MRPS10P82664 201 aaKnown RBP15.08■□□□□ 0
CCDC88B-209ENST00000494080 AGBL4Q5VU57 503 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 TMEM64Q6YI46 380 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 NLRC3Q7RTR2 1065 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 C19orf47Q8N9M1 422 aaKnown RBP15.08■□□□□ 0
CCDC88B-209ENST00000494080 OR2T4Q8NH00 348 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 MFSD8Q8NHS3 518 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 MRGPRX1Q96LB2 322 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 RPS10P5Q9NQ39 176 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 MYEF2Q9P2K5 600 aaKnown RBP15.08■□□□□ 0
CCDC88B-209ENST00000494080 TRPM6Q9BX84 2022 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 IGLV3-16A0A075B6K0 115 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 PRICKLE3O43900 615 aaPredicted RBP15.08■□□□□ 0
CCDC88B-209ENST00000494080 ALG10Q5BKT4 473 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 ESPNLQ6ZVH7 1005 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 SFTPA1Q8IWL2 248 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 OR5T2Q8NGG2 359 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 RSC1A1Q92681 617 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 UCN3Q969E3 161 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 WDFY2Q96P53 400 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 C12orf57Q99622 126 aa15.08■□□□□ 0
CCDC88B-209ENST00000494080 EXO1Q9UQ84 846 aaKnown RBP15.08■□□□□ 0
CCDC88B-209ENST00000494080 A0A1B0GV50 99 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 PRSS44E7EML9 344 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 PEX12O00623 359 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 GAPDHSO14556 408 aaPredicted RBP15.07■□□□□ 0
CCDC88B-209ENST00000494080 FADS1O60427 444 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 RAD1O60671 282 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 RBMXL2O75526 392 aaKnown RBP15.07■□□□□ 0
CCDC88B-209ENST00000494080 LDOC1O95751 146 aaPredicted RBP15.07■□□□□ 0
CCDC88B-209ENST00000494080 FOSL1P15407 271 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 HTRA4P83105 476 aaPredicted RBP15.07■□□□□ 0
CCDC88B-209ENST00000494080 RASGEF1BQ0VAM2 473 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 TRMT12Q53H54 448 aaKnown RBP15.07■□□□□ 0
CCDC88B-209ENST00000494080 NKAPLQ5M9Q1 402 aa15.07■□□□□ 0
CCDC88B-209ENST00000494080 FBXL6Q8N531 539 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms