RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 TRAPPC4Q9Y296 219 aa15.39■□□□□ 0.05
LIME1-208ENST00000493265 CREBBPQ92793 2442 aa15.39■□□□□ 0.05
LIME1-208ENST00000493265 SVILO95425 2214 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 FIGNL2A6NMB9 653 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 AHRRA9YTQ3 701 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 FTCDNL1E5RQL4 147 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 G3V2T6 193 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 M0R082 166 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 HIST1H2ABP04908 130 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ENPP1P22413 925 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 IFNGR2P38484 337 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 CTBP2P56545 445 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 NUP107P57740 925 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 RAC3P60763 192 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ACSF3Q4G176 576 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 OTUD3Q5T2D3 398 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 ANKRD34AQ69YU3 496 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 PGBD2Q6P3X8 592 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 SHQ1Q6PI26 577 aaKnown RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 HIST3H2AQ7L7L0 130 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 MAMDC2Q7Z304 686 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 SLC46A3Q7Z3Q1 461 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ZER1Q7Z7L7 766 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 STK32CQ86UX6 486 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 DOLPP1Q86YN1 238 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 CCDC103Q8IW40 242 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 TMEM99Q8N816 258 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 OR13C2Q8NGS9 318 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ZNF417Q8TAU3 575 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 FNDC9Q8TBE3 224 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ZPLD1Q8TCW7 415 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 HIST1H2ACQ93077 130 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 CPNE4Q96A23 557 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 ZNF587Q96SQ5 575 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 NAA11Q9BSU3 229 aaPredicted RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 KLHL13Q9P2N7 655 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 MCTS1Q9ULC4 181 aaKnown RBP15.38■□□□□ 0.05
LIME1-208ENST00000493265 OAZ3Q9UMX2 235 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 TMEM5Q9Y2B1 443 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 ZNF835Q9Y2P0 537 aa15.38■□□□□ 0.05
LIME1-208ENST00000493265 MPDZO75970 2070 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 SLC22A20A6NK97 555 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 ZNF814B7Z6K7 855 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 WDR1O75083 606 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 MT-ATP6P00846 226 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 GASTP01350 101 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 ACVR2AP27037 513 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 OMPP47874 163 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 CASP6P55212 293 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 PMS2P3Q13401 168 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 ZNF239Q16600 458 aaKnown RBP15.37■□□□□ 0.05
LIME1-208ENST00000493265 C1orf185Q5T7R7 199 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 NANOGNBQ7Z5D8 188 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 ZDHHC13Q8IUH4 622 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 RPRMLQ8N4K4 120 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 LINC00471Q8N535 108 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 OR51A7Q8NH64 312 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 GNPDA2Q8TDQ7 276 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 SDCCAG3Q96C92 435 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 FEVQ99581 238 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 GPA33Q99795 319 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 CIB1Q99828 191 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 TP63Q9H3D4 680 aaPredicted RBP15.37■□□□□ 0.05
LIME1-208ENST00000493265 DCLRE1BQ9H816 532 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 PAQR5Q9NXK6 330 aaPredicted RBP15.37■□□□□ 0.05
LIME1-208ENST00000493265 KIF17Q9P2E2 1029 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 NKX1-2Q9UD57 310 aaPredicted RBP15.37■□□□□ 0.05
LIME1-208ENST00000493265 ZNF229Q9UJW7 825 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 DOPEY1Q5JWR5 2465 aa15.37■□□□□ 0.05
LIME1-208ENST00000493265 TRAV27A0A087WT01 109 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 UNC119BA6NIH7 251 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 C11orf98E9PRG8 122 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 BLOC1S5-TXNDC5H3BN57 136 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 PDLIM1O00151 329 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 CDC42EP2O14613 210 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 SMAD9O15198 467 aaKnown RBP15.36■□□□□ 0.05
LIME1-208ENST00000493265 EIF1BO60739 113 aaKnown RBP15.36■□□□□ 0.05
LIME1-208ENST00000493265 RAMP1O60894 148 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 SERPINI2O75830 405 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 AQP8O94778 261 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 OR6A2O95222 327 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 TGM6O95932 706 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 GABRA1P14867 456 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 GK3PQ14409 553 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 MFSD13AQ14CX5 517 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 SF3B4Q15427 424 aaKnown RBP eCLIP15.36■□□□□ 0.057e-24■■■■□ 26
LIME1-208ENST00000493265 ZNF770Q6IQ21 691 aaPredicted RBP15.36■□□□□ 0.05
LIME1-208ENST00000493265 Q6ZPB1 254 aaPredicted RBP15.36■□□□□ 0.05
LIME1-208ENST00000493265 H1FNTQ75WM6 255 aaPredicted RBP15.36■□□□□ 0.05
LIME1-208ENST00000493265 FCRLAQ7L513 359 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 OAFQ86UD1 273 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 GPAT4Q86UL3 456 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 HIPK1Q86Z02 1210 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 KDM8Q8N371 416 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 ATG16L2Q8NAA4 619 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 OR5J2Q8NH18 312 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 OR6S1Q8NH40 331 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 FKRPQ9H9S5 495 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 CHST11Q9NPF2 352 aa15.36■□□□□ 0.05
LIME1-208ENST00000493265 CLEC4AQ9UMR7 237 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms