RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 PON3Q15166 354 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ZNF79Q15937 498 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 VWA2Q5GFL6 755 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 LINC01590Q5TEZ4 76 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ARHGAP40Q5TG30 622 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 HLA-DQA1Q5Y7H0 255 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 GPR139Q6DWJ6 353 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 CBLN3Q6UW01 205 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 PAMR1Q6UXH9 720 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 KCTD20Q7Z5Y7 419 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 Q8N9G6 341 aaPredicted RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 OR52E2Q8NGJ4 325 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 CEP76Q8TAP6 659 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 RNF217Q8TC41 542 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 TMEM203Q969S6 136 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 PGLYRP3Q96LB9 341 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 LMF1Q96S06 567 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ADOQ96SZ5 270 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 CNN2Q99439 309 aaKnown RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 KCNS3Q9BQ31 491 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 ABCB10Q9NRK6 738 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 YARS2Q9Y2Z4 477 aaKnown RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 IER3IP1Q9Y5U9 82 aa9.78□□□□□ -0.84
USP4-214ENST00000491791 SIRT4Q9Y6E7 314 aaPredicted RBP9.78□□□□□ -0.84
USP4-214ENST00000491791 TRAV36DV7A0A075B6V5 113 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 TRAV1-2A0A0B4J238 106 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 A0A1W2PQL4 384 aaPredicted RBP9.77□□□□□ -0.85
USP4-214ENST00000491791 A0A1W2PQM1 296 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 PATE3B3GLJ2 98 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 CDX4O14627 284 aaPredicted RBP9.77□□□□□ -0.85
USP4-214ENST00000491791 ICOSLGO75144 302 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 REM1O75628 298 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 SERPINA3P01011 423 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 BGLAPP02818 100 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 CLEC2LP0C7M8 214 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 SPI1P17947 270 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 ABCD3P28288 659 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 SDHAP31040 664 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 CENPAP49450 140 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 PSMD7P51665 324 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 MAP2K6P52564 334 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 SUMO3P55854 103 aaPredicted RBP9.77□□□□□ -0.85
USP4-214ENST00000491791 SLC26A5P58743 744 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 LTBQ06643 244 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NNATQ16517 81 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NDUFAF6Q330K2 333 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 KLHL12Q53G59 568 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 ZNF684Q5T5D7 378 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 MZT2AQ6P582 158 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 RPL22L1Q6P5R6 122 aaKnown RBP9.77□□□□□ -0.85
USP4-214ENST00000491791 SLC23A3Q6PIS1 610 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 UNQ9370/PRO34162Q6UXP9 181 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 OVCH1Q7RTY7 1134 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 MARCH9Q86YJ5 346 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 GATAD2AQ86YP4 633 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 LAX1Q8IWV1 398 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 LRRC17Q8N6Y2 441 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 DEFB124Q8NES8 71 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 OR10H4Q8NGA5 316 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NEIL3Q8TAT5 605 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 STT3BQ8TCJ2 826 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 STK35Q8TDR2 534 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NACC2Q96BF6 587 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 ATF6BQ99941 703 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 TTYH2Q9BSA4 534 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 SCNM1Q9BWG6 230 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 YIPF2Q9BWQ6 316 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 OR51V1Q9H2C8 321 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 LRRN3Q9H3W5 708 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 MARCH7Q9H992 704 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NANSQ9NR45 359 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 ST6GALNAC2Q9UJ37 374 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 NPFFR2Q9Y5X5 522 aa9.77□□□□□ -0.85
USP4-214ENST00000491791 IGLV3-32A0A0A0MS00 114 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 IGHV5-10-1A0A0J9YXX1 117 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 ZC3H12DA2A288 527 aaKnown RBP9.76□□□□□ -0.85
USP4-214ENST00000491791 OR6C68A6NDL8 312 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 HSPB2A8KAH6 182 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 NDUFB5O43674 189 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 GPRIN2O60269 458 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 SLC19A2O60779 497 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 GATBO75879 557 aaKnown RBP9.76□□□□□ -0.85
USP4-214ENST00000491791 TFP02787 698 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 CFIP05156 583 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 SPINK2P20155 84 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 TACR3P29371 465 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 IL12BP29460 328 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 HTR3AP46098 478 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 PPM1FP49593 454 aaPredicted RBP9.76□□□□□ -0.85
USP4-214ENST00000491791 EVX1P49640 407 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 P2RX1P51575 399 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 NR0B1P51843 470 aaKnown RBP9.76□□□□□ -0.85
USP4-214ENST00000491791 RNF4P78317 190 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 PLCXD2Q0VAA5 305 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 ASAH1Q13510 395 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 TRA2AQ13595 282 aaKnown RBP eCLIP9.76□□□□□ -0.85
USP4-214ENST00000491791 CBFBQ13951 182 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 HSPB2Q16082 182 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 HLA-BQ31612 363 aa9.76□□□□□ -0.85
USP4-214ENST00000491791 NKAIN1Q4KMZ8 207 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms