RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 FAM216AQ8WUB2 273 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 TMEM186Q96B77 213 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 TUBGCP3Q96CW5 907 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 MECRQ9BV79 373 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 NARFLQ9H6Q4 476 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 MOV10Q9HCE1 1003 aaKnown RBP12.06□□□□□ -0.48
VARS-227ENST00000489979 ADPRHL2Q9NX46 363 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 SPEF1Q9Y4P9 236 aa12.06□□□□□ -0.48
VARS-227ENST00000489979 IGHV2OR16-5A0A0B4J2B6 119 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 CFAP73A6NFT4 308 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 FAAHO00519 579 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 HOXB1P14653 301 aaPredicted RBP12.05□□□□□ -0.48
VARS-227ENST00000489979 CBR1P16152 277 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 CXCR1P25024 350 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 ROR2Q01974 943 aaKnown RBP12.05□□□□□ -0.48
VARS-227ENST00000489979 EPS8Q12929 822 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 BNIP2Q12982 314 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 SCGB2A2Q13296 93 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 SAXO2Q658L1 398 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 SHQ1Q6PI26 577 aaKnown RBP12.05□□□□□ -0.48
VARS-227ENST00000489979 PEG10Q86TG7 708 aaKnown RBP12.05□□□□□ -0.48
VARS-227ENST00000489979 EPHX4Q8IUS5 362 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 CMIPQ8IY22 773 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 IFT20Q8IY31 132 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 ANKFN1Q8N957 763 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 CLDND2Q8NHS1 167 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 C16orf45Q96MC5 204 aaPredicted RBP12.05□□□□□ -0.48
VARS-227ENST00000489979 ZDHHC2Q9UIJ5 367 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 PCDHB10Q9UN67 800 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 GRIP1Q9Y3R0 1128 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 TRRAPQ9Y4A5 3859 aa12.05□□□□□ -0.48
VARS-227ENST00000489979 AGAP5A6NIR3 686 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 TMEM229AB2RXF0 380 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 TRIM77I1YAP6 450 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 HMGN4O00479 90 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 C1QCP02747 245 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 UQCRBP14927 111 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 ARRB2P32121 409 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 CHI3L1P36222 383 aaPredicted RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 SH3BGRP55822 239 aaPredicted RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 ARF1P84077 181 aaKnown RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 EMX2Q04743 252 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 NPRL3Q12980 569 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 MAD2L1Q13257 205 aaPredicted RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 SNTB2Q13425 540 aaKnown RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 DAG1Q14118 895 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 SYPL1Q16563 259 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 ELFN2Q5R3F8 820 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 PRAMEF8Q5VWM4 474 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 PRAMEF7Q5VXH5 474 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 KRT80Q6KB66 452 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 CARM1Q86X55 608 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 OR8J2Q8NGG1 315 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 NEURL3Q96EH8 262 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 LRRC37BQ96QE4 947 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 TAPBPLQ9BX59 468 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 LINC00470Q9BZP3 86 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 SLC38A1Q9H2H9 487 aa12.04□□□□□ -0.48
VARS-227ENST00000489979 NOP53Q9NZM5 478 aaKnown RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 MARCOQ9UEW3 520 aaPredicted RBP12.04□□□□□ -0.48
VARS-227ENST00000489979 PKD1L1Q8TDX9 2849 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 PRSS51A0A1B0GVH4 220 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 ZNF503-AS2A6NEH8 195 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 WNT9BO14905 357 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 VAMP5O95183 116 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 MSMBP08118 114 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 CHRM4P08173 479 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 SAGP10523 405 aaPredicted RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 COL8A2P25067 703 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 GPR6P46095 362 aaPredicted RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 HILS1P60008 231 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 GSTA3Q16772 222 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 MRPL2Q5T653 305 aaKnown RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 USP43Q70EL4 1123 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 GSPT2Q8IYD1 628 aaKnown RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 EPS8L3Q8TE67 593 aaKnown RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 TRNT1Q96Q11 434 aaKnown RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 SLC35A5Q9BS91 424 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 RBM4Q9BWF3 364 aaKnown RBP12.03□□□□□ -0.48
VARS-227ENST00000489979 DPY30Q9C005 99 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 NOX3Q9HBY0 568 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 CRLF2Q9HC73 371 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 ASIC5Q9NY37 505 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 TREM2Q9NZC2 230 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 REV1Q9UBZ9 1251 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 USP22Q9UPT9 525 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 CMAHPQ9Y471 501 aa12.03□□□□□ -0.48
VARS-227ENST00000489979 A8MVM7 634 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 FRS3O43559 492 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 TFP02787 698 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 HPXP02790 462 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 GKN3PP0CG01 181 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 GAAP10253 952 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 CREB1P16220 341 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 IL7RP16871 459 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 TCN1P20061 433 aaPredicted RBP12.02□□□□□ -0.49
VARS-227ENST00000489979 EPHA1P21709 976 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 RPS4Y1P22090 263 aaKnown RBP12.02□□□□□ -0.49
VARS-227ENST00000489979 ARR3P36575 388 aa12.02□□□□□ -0.49
VARS-227ENST00000489979 CLDN17P56750 224 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms