RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 TSPO2Q5TGU0 170 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 OR2G6Q5TZ20 316 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 Q6ZPB1 254 aaPredicted RBP1.55□□□□□ -2.16
CPSF3-205ENST00000489629 ACOT7LQ6ZUV0 252 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 ARCQ7LC44 396 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF429Q86V71 674 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 VRK2Q86Y07 508 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 SLC35F2Q8IXU6 374 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 ATP6V0D2Q8N8Y2 350 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 Q8N9W7 124 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 OR52I1Q8NGK6 324 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 OR5D13Q8NGL4 314 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 FAM110BQ8TC76 370 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 HTR3CQ8WXA8 447 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 RAPGEF5Q92565 580 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 EFHD2Q96C19 240 aaPredicted RBP1.55□□□□□ -2.16
CPSF3-205ENST00000489629 COQ2Q96H96 371 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 CNDP1Q96KN2 507 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 TMEM43Q9BTV4 400 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 VCPKMTQ9H867 229 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 KIF25Q9UIL4 384 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 HPCAL4Q9UM19 191 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 IFT52Q9Y366 437 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 UGT2A1Q9Y4X1 527 aa1.55□□□□□ -2.16
CPSF3-205ENST00000489629 IGHV3OR16-13A0A075B7E8 117 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 IGKV1D-8A0A087WSZ0 117 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 C15orf38-AP3S2A0A0A6YYH1 394 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 NKX2-6A6NCS4 301 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 IDSB3KWA1 339 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 TMX2-CTNND1H3BSU7 103 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF208O43345 1280 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 PFKFB2O60825 505 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 RAMP3O60896 148 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 ZNF780AO75290 641 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SNAPINO95295 136 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 AP2A1O95782 977 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SERPINA3P01011 423 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 GAPDHP04406 335 aaKnown RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 POU2F1P14859 743 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 GCAP28676 217 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 CALCRP30988 508 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 KLK7P49862 253 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 APOC4P55056 127 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 KLRB1Q12918 225 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 UNC119Q13432 240 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 VGLL4Q14135 290 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 ARL6IP1Q15041 203 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SLC15A2Q16348 729 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 EXOC3L2Q2M3D2 409 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 RABL6Q3YEC7 729 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 BOLA3Q53S33 107 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 PDZK1Q5T2W1 519 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 C1orf146Q5VVC0 180 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 OR4F3Q6IEY1 312 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 C11orf71Q6IPW1 123 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 ZYG11AQ6WRX3 759 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 RNF165Q6ZSG1 346 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 DHDDSQ86SQ9 333 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 CCDC50Q8IVM0 306 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 RDH10Q8IZV5 341 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 NKAPP1Q8N9T2 125 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 RNF139Q8WU17 664 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 DNAJA4Q8WW22 397 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 ST8SIA1Q92185 356 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 N4BP2L2Q92802 583 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 NT5C3BQ969T7 300 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 TCEANC2Q96MN5 208 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 NPY6RQ99463 290 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 CAPS2Q9BXY5 557 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 PARD6BQ9BYG5 372 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SELENOIQ9C0D9 397 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SUDS3Q9H7L9 328 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SH2D2AQ9NP31 389 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 DCAF16Q9NXF7 216 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 C6orf203Q9P0P8 240 aaPredicted RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 BTNL2Q9UIR0 455 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 CDH9Q9ULB4 789 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 PRPF19Q9UMS4 504 aaKnown RBP1.54□□□□□ -2.16
CPSF3-205ENST00000489629 TTC21BQ7Z4L5 1316 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SH3TC1Q8TE82 1336 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 LRP4O75096 1905 aa1.54□□□□□ -2.16
CPSF3-205ENST00000489629 SYNJ2BP-COX16A0A087WUM0 186 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 IGHV1OR21-1A0A087WYE8 117 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ARHGEF35A5YM69 484 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 HELTA6NFD8 242 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 A8MUA0 341 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 RGS16O15492 202 aaPredicted RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 ATP5LO75964 103 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SCGNO76038 276 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 DIRAS1O95057 198 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 STAMBPO95630 424 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 IGKV1-17P01599 117 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 OPN1MWP04001 364 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 HSMCR30P0CW71 290 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 OPN1MW2P0DN77 364 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 OPN1MW3P0DN78 364 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 DBTP11182 482 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 HMGB2P26583 209 aaKnown RBP1.53□□□□□ -2.16
CPSF3-205ENST00000489629 SHMT2P34897 504 aa1.53□□□□□ -2.16
CPSF3-205ENST00000489629 RFC4P35249 363 aa1.53□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms