RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	MAPK11	Q15759	364 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	CD226	Q15762	336 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	ZSCAN26	Q16670	478 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	DUSP7	Q16829	419 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	MTX3	Q5HYI7	312 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	PDSS1	Q5T2R2	415 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	VASN	Q6EMK4	673 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	WBP2NL	Q6ICG8	309 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	FAM214B	Q7L5A3	538 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	YTHDF3	Q7Z739	585 aa	Known RBP	7.82	□□□□□ -1.16
USP4-213	ENST00000488520	YRDC	Q86U90	279 aa	Known RBP	7.82	□□□□□ -1.16
USP4-213	ENST00000488520	CYP4Z1	Q86W10	505 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	CLIP4	Q8N3C7	705 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	CADM2	Q8N3J6	435 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	FADS6	Q8N9I5	356 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	FAM156A	Q8NDB6	213 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	FAM83F	Q8NEG4	500 aa	Predicted RBP	7.82	□□□□□ -1.16
USP4-213	ENST00000488520	SPATA3	Q8NHX4	192 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	7.82	□□□□□ -1.16
USP4-213	ENST00000488520	GPR119	Q8TDV5	335 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	ABTB1	Q969K4	478 aa	Predicted RBP	7.82	□□□□□ -1.16
USP4-213	ENST00000488520	C1GALT1C1	Q96EU7	318 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	WDYHV1	Q96HA8	205 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	SFXN2	Q96NB2	322 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	DACH2	Q96NX9	599 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	BDH2	Q9BUT1	245 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	PRDM14	Q9GZV8	571 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	PCDHAC1	Q9H158	963 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	UBTD1	Q9HAC8	227 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	JKAMP	Q9P055	326 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	ACTR3B	Q9P1U1	418 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	KCNE5	Q9UJ90	142 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	FBXL2	Q9UKC9	423 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	USP22	Q9UPT9	525 aa		7.82	□□□□□ -1.16
USP4-213	ENST00000488520	CD8B2	A6NJW9	211 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	PAX4	O43316	350 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	TPST1	O60507	370 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	PDE5A	O76074	875 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ACTL6A	O96019	429 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	PEPD	P12955	493 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CHM	P24386	653 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	SLC1A3	P43003	542 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	TAS2R41	P59536	307 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	RPS3A	P61247	264 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	TAGLN	Q01995	201 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	SRY	Q05066	204 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	DMTN	Q08495	405 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	MERTK	Q12866	999 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	QPRT	Q15274	297 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	NDUFAF6	Q330K2	333 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	IFI44L	Q53G44	452 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	FNDC7	Q5VTL7	733 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CBLN3	Q6UW01	205 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CYP2R1	Q6VVX0	501 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CBLL1	Q75N03	491 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	RRM2B	Q7LG56	351 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	SPATA24	Q86W54	205 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	WFDC3	Q8IUB2	231 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	GCNT2	Q8N0V5	402 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ATP6V1C2	Q8NEY4	427 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	VANGL1	Q8TAA9	524 aa	Predicted RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	RNF138	Q8WVD3	245 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ST8SIA1	Q92185	356 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	INTS12	Q96CB8	462 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CCDC124	Q96CT7	223 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ASB9	Q96DX5	294 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	PYURF	Q96I23	114 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CLPTM1L	Q96KA5	538 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	MRGPRX4	Q96LA9	322 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	MCHR1	Q99705	422 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	TUBA1C	Q9BQE3	449 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CADM1	Q9BY67	442 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	RTN4R	Q9BZR6	473 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	LRMDA	Q9H2I8	198 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	YY1AP1	Q9H869	796 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	CALHM2	Q9HA72	323 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	TIGAR	Q9NQ88	270 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ACER3	Q9NUN7	267 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	DCAF13	Q9NV06	445 aa	Known RBP	7.81	□□□□□ -1.16
USP4-213	ENST00000488520	MED17	Q9NVC6	651 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ICAM5	Q9UMF0	924 aa		7.81	□□□□□ -1.16
USP4-213	ENST00000488520	ALPK2	Q86TB3	2170 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	TNFSF12-TNFSF13	A0A0A6YY99	330 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	CENPVL1	A0A0U1RR11	272 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	ARPC2	O15144	300 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	ZIC3	O60481	467 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	GCM2	O75603	506 aa	Predicted RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	PRKD3	O94806	890 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	GOSR1	O95249	250 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	IL18BP	O95998	194 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	IFNW1	P05000	195 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	TFPI	P10646	304 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	UMPS	P11172	480 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	HOXB6	P17509	224 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	POLR2H	P52434	150 aa	Known RBP	7.8	□□□□□ -1.16
USP4-213	ENST00000488520	MAP2K6	P52564	334 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SESN3	P58005	492 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	CHRNB3	Q05901	458 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	EPS8	Q12929	822 aa		7.8	□□□□□ -1.16
USP4-213	ENST00000488520	SKP2	Q13309	424 aa		7.8	□□□□□ -1.16

Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms