RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 UBE2J2Q8N2K1 259 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 OR9K2Q8NGE7 335 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 BCAS4Q8TDM0 211 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 APH1AQ96BI3 265 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 SLC41A3Q96GZ6 507 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 NSL1Q96IY1 281 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 PCDHAC1Q9H158 963 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 TESMINQ9Y4I5 508 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 FLVCR1Q9Y5Y0 555 aa13.08□□□□□ -0.32
USP4-212ENST00000486549 TACC2O95359 2948 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 A6NNC1 897 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 M0R082 166 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 CASKO14936 926 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 OR2T1O43869 369 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 LYPD3O95274 346 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 P2RY4P51582 365 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 PIN1Q13526 163 aaPredicted RBP13.07□□□□□ -0.32
USP4-212ENST00000486549 POU4F3Q15319 338 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 FBXW10Q5XX13 1052 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 TTC33Q6PID6 262 aaPredicted RBP13.07□□□□□ -0.32
USP4-212ENST00000486549 CBLL1Q75N03 491 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 CDH24Q86UP0 819 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 GABRG1Q8N1C3 465 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 KDM8Q8N371 416 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 ZNF417Q8TAU3 575 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 HSH2DQ96JZ2 352 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 DACH2Q96NX9 599 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 WFIKKN1Q96NZ8 548 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 ZNF587Q96SQ5 575 aaPredicted RBP13.07□□□□□ -0.32
USP4-212ENST00000486549 CDRT15Q96T59 188 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 TMEM43Q9BTV4 400 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 NDE1Q9NXR1 346 aa13.07□□□□□ -0.32
USP4-212ENST00000486549 B2RBV5 119 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 LRRN3E7EW58 273 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 GMNNO75496 209 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 BGLAPP02818 100 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 IFNW1P05000 195 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 NQO1P15559 274 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 IL32P24001 234 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 NTF4P34130 210 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 MSX2P35548 267 aaPredicted RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 YAP1P46937 504 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 PCYT1AP49585 367 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 MNAT1P51948 309 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 IFI44LQ53G44 452 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 SAMD4BQ5PRF9 694 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 GLYATQ6IB77 296 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 ALKBH2Q6NS38 261 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 LINC00114Q6XXX2 140 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 Q6ZT83 130 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 FKBP9P1Q75LS8 142 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 RBM15BQ8NDT2 890 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 MOGAT1Q96PD6 335 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 ZNF385AQ96PM9 386 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 SF3B5Q9BWJ5 86 aaKnown RBP13.06□□□□□ -0.32
USP4-212ENST00000486549 ASPNQ9BXN1 380 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 ACTR6Q9GZN1 396 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 RIMS3Q9UJD0 308 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 RASD1Q9Y272 281 aa13.06□□□□□ -0.32
USP4-212ENST00000486549 HRNRQ86YZ3 2850 aaPredicted RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 LYZL6O75951 148 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 VAMP5O95183 116 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 OR5F1O95221 314 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 GOSR1O95249 250 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 PSMB1P20618 241 aaKnown RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 LTBQ06643 244 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 SFRP5Q5T4F7 317 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 FBXW9Q5XUX1 488 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 C22orf34Q6ZV56 151 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 H1FNTQ75WM6 255 aaPredicted RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 AAED1Q7RTV5 226 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 NKAIN4Q8IVV8 208 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 ZIC4Q8N9L1 334 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 GEMIN6Q8WXD5 167 aaKnown RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 KISS1RQ969F8 398 aaPredicted RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 S100PBPQ96BU1 408 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 MPP4Q96JB8 637 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 PRRC1Q96M27 445 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 PRSS27Q9BQR3 290 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 POLDIP3Q9BY77 421 aaKnown RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 AMBRA1Q9C0C7 1298 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 POLR2J2Q9GZM3 115 aaKnown RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 POLR2J3Q9H1A7 115 aaKnown RBP13.05□□□□□ -0.32
USP4-212ENST00000486549 PARPBPQ9NWS1 579 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 ZNF226Q9NYT6 803 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 RPS6KA6Q9UK32 745 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 GPR52Q9Y2T5 361 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 SNX13Q9Y5W8 968 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 V9GYQ6 96 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 POLQO75417 2590 aa13.05□□□□□ -0.32
USP4-212ENST00000486549 J3KTA2 159 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CTAG2O75638 210 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CH25HO95992 272 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 UMPSP11172 480 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 HSD17B1P14061 328 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 ZNF43P17038 809 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 CALB2P22676 271 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 IGHV1-2P23083 117 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 FAPQ12884 760 aa13.04□□□□□ -0.32
USP4-212ENST00000486549 ITGADQ13349 1161 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms