RNA–Protein interactions for RNA: ENST00000483212.1

USP4-210, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 727 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-210ENST00000483212 WISP2O76076 250 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 NDUFB2O95178 105 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 RCBTB2O95199 551 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 PMS2P2O95744 297 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 IGHG3P01860 377 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 OPN1LWP04000 364 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TFPIP10646 304 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ZNF708P17019 499 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 KLK2P20151 261 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 POU1F1P28069 291 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 GRPRP30550 384 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 GRK5P34947 590 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 AQP2P41181 271 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 STARP49675 285 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 LHX2P50458 406 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 RPS6KA3P51812 740 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 SUCLG1P53597 346 aaKnown RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 TPD52P55327 224 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 CLDN18P56856 261 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 CLDN20P56880 219 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 NUP107P57740 925 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 MYBPC1Q00872 1141 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 RPL18Q07020 188 aaKnown RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 ZP4Q12836 540 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 MED21Q13503 144 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 MAD2L1BPQ15013 274 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 PDK3Q15120 406 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TOMM20Q15388 145 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 OR7A5Q15622 319 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TMEM176BQ3YBM2 270 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 CLEC12AQ5QGZ9 265 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ZNF362Q5T0B9 420 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 SLC27A4Q6P1M0 643 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TMPPEQ6ZT21 453 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ASB18Q6ZVZ8 466 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 MAMDC2Q7Z304 686 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 FAM122BQ7Z309 247 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 SLC22A16Q86VW1 577 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 CCDC103Q8IW40 242 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 C8orf59Q8N0T1 100 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 LNX2Q8N448 690 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 SCAIQ8N9R8 606 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ADPRHL1Q8NDY3 354 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 OR5J2Q8NH18 312 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ZNF417Q8TAU3 575 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TEX47Q8TBZ9 253 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 RELTQ969Z4 430 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ZNF775Q96BV0 537 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 SLC25A36Q96CQ1 311 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 DTNBP1Q96EV8 351 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 KLHL15Q96M94 604 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 OR5B2Q96R09 309 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ZNF587Q96SQ5 575 aaPredicted RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 ADNPQ9H2P0 1102 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 Q9H521 79 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 NRIP3Q9NQ35 241 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TBC1D23Q9NUY8 699 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ALKBH4Q9NXW9 302 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 MRPL39Q9NYK5 338 aaKnown RBP7.4□□□□□ -1.22
USP4-210ENST00000483212 AASSQ9UDR5 926 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TUBD1Q9UJT1 453 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 RNF6Q9Y252 685 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 TRAPPC4Q9Y296 219 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 B3GNT3Q9Y2A9 372 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 SLC6A5Q9Y345 797 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 CORINQ9Y5Q5 1042 aa7.4□□□□□ -1.22
USP4-210ENST00000483212 ATMQ13315 3056 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 A0A1B0GVC2 190 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 A0A1W2PNV4 684 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 MS4A18H0YCH9 400 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 ACOT7O00154 380 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 ARPC3O15145 178 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 SURF4O15260 269 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 PRKYO43930 277 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 PPP1R3DO95685 299 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 TXNDC12O95881 172 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 IGHMP01871 453 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 FAM87AP0C7U9 286 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 APEHP13798 732 aaKnown RBP7.39□□□□□ -1.23
USP4-210ENST00000483212 ZNF24P17028 368 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 BMP7P18075 431 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 SLC6A6P31641 620 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 SFTPDP35247 375 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 PCYT1AP49585 367 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 DIO1P49895 249 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 AGFG1P52594 562 aaKnown RBP7.39□□□□□ -1.23
USP4-210ENST00000483212 SMSP52788 366 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 PRPS1P60891 318 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 H3F3AP84243 136 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 TEKQ02763 1124 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 CDK5R2Q13319 367 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 SLC10A1Q14973 349 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 MFSD13AQ14CX5 517 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 INAQ16352 499 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 BCL2A1Q16548 175 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 MS4A18Q3C1V0 323 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 PLEKHN1Q494U1 663 aaPredicted RBP7.39□□□□□ -1.23
USP4-210ENST00000483212 TMEM201Q5SNT2 666 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 DPY19L2P2Q6ZN68 376 aa7.39□□□□□ -1.23
USP4-210ENST00000483212 NANOGNBQ7Z5D8 188 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms