RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 C8orf82Q6P1X6 216 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CCNI2Q6ZMN8 369 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF621Q6ZSS3 439 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 FAM92BQ6ZTR7 304 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 MON1BQ7L1V2 547 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 LINGO2Q7L985 606 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 GOLGA7Q7Z5G4 137 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 LYG2Q86SG7 212 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NT5DC3Q86UY8 548 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 BBS7Q8IWZ6 715 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CLIP4Q8N3C7 705 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 BMPERQ8N8U9 685 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 PPFIBP2Q8ND30 876 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 OR2L5Q8NG80 312 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 OR4N2Q8NGD1 307 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SNAPC3Q92966 411 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 HIST1H2ACQ93077 130 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ERGIC1Q969X5 290 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SCRN2Q96FV2 425 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 DEFB118Q96PH6 123 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 RBBP8Q99708 897 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SEC22CQ9BRL7 303 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TIMM29Q9BSF4 260 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 DDA1Q9BW61 102 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ZYG11BQ9C0D3 744 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 PCBD2Q9H0N5 130 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SYT4Q9H2B2 425 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TRABDQ9H4I3 376 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 C10orf88Q9H8K7 445 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CTPS2Q9NRF8 586 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 INPP5EQ9NRR6 644 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 GNG12Q9UBI6 72 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 KCNG2Q9UJ96 466 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 TIMM10BQ9Y5J6 103 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 ALG6Q9Y672 507 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 FKBP7Q9Y680 259 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC22A7Q9Y694 548 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 CDH10Q9Y6N8 788 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 A3GALT2U3KPV4 340 aa4.25□□□□□ -1.73
CCDC88A-210ENST00000468534 NRCAMQ92823 1304 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 USP42Q9H9J4 1324 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PRR23AA6NEV1 266 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CENPXA8MT69 81 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 C9J4A7 227 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NPIPA3F8WFD2 350 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 M0QZK8 103 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 M0R3G1 203 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TFECO14948 347 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC31A2O15432 143 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 MAGEB4O15481 346 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SGCEO43556 437 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TOM1O60784 492 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CCNKO75909 580 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 EPOP01588 193 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ATP1A1P05023 1023 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CALB1P05937 261 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CT62P0C5K7 136 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 THRAP10827 490 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NQO1P15559 274 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF12P17014 697 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 KITLGP21583 273 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 BCKDHBP21953 392 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 WARSP23381 471 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SHMT2P34897 504 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TIMP3P35625 211 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 RFX3P48380 749 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NPY2RP49146 381 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 NOVA1P51513 510 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 DNA2P51530 1060 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 EFNB2P52799 333 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 RAG2P55895 527 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 UBE2KP61086 200 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PSPHP78330 225 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZP4Q12836 540 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SELENBP1Q13228 472 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 C1orf61Q13536 156 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 PSG5Q15238 335 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 LTB4RQ15722 352 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF284Q2VY69 593 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF672Q499Z4 452 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF658BQ4V348 819 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 GCSAMLQ5JQS6 135 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 LY6G6FQ5SQ64 297 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TIMM23BQ5SRD1 257 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 AGAP7PQ5VUJ5 663 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ZNF776Q68DI1 518 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 C22orf42Q6IC83 251 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 DNM1P34Q6PK57 102 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 C4orf22Q6V702 233 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 C19orf35Q6ZS72 473 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 SLC16A14Q7RTX9 510 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 TIPARPQ7Z3E1 657 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CPEB2Q7Z5Q1 589 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 S100A7AQ86SG5 101 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 GPBP1Q86WP2 473 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 HORMAD1Q86X24 394 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 MARCH9Q86YJ5 346 aa4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 ERI1Q8IV48 349 aaKnown RBP4.24□□□□□ -1.73
CCDC88A-210ENST00000468534 CROCCP3Q8IVE0 287 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms