RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 KCNS3Q9BQ31 491 aa18.38■□□□□ 0.53
COL9A3-207ENST00000467819 PIF1Q9H611 641 aa18.38■□□□□ 0.53
COL9A3-207ENST00000467819 TPT1P8Q9HAU6 139 aa18.38■□□□□ 0.53
COL9A3-207ENST00000467819 CACYBPQ9HB71 228 aaKnown RBP18.38■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM45AQ9NWC5 275 aa18.38■□□□□ 0.53
COL9A3-207ENST00000467819 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.37■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM120BA0PK00 339 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 FAM157CP0CG43 387 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 IGHV4-31P0DP07 118 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 USF1P22415 310 aaPredicted RBP18.37■□□□□ 0.53
COL9A3-207ENST00000467819 TUBA1BP68363 451 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 TUBA4AP68366 448 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SWI5Q1ZZU3 235 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 MST1LQ2TV78 715 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SLC9B1Q4ZJI4 515 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 ATG16L1Q676U5 607 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 CREB3L2Q70SY1 520 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 TUBA1AQ71U36 451 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SERPINA11Q86U17 422 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 PROX1Q92786 737 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 VPS33AQ96AX1 596 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 C3orf49Q96BT1 292 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SORCS2Q96PQ0 1159 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SLC38A2Q96QD8 506 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 ZNF232Q9UNY5 417 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 CHST2Q9Y4C5 530 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 SVEP1Q4LDE5 3571 aa18.37■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM247A6NEH6 219 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 VAMP5O95183 116 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 F12P00748 615 aaPredicted RBP18.36■□□□□ 0.53
COL9A3-207ENST00000467819 ZCCHC18P0CG32 403 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 UBE2NP61088 152 aaKnown RBP18.36■□□□□ 0.53
COL9A3-207ENST00000467819 C6orf10Q5SRN2 563 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 CYB5R2Q6BCY4 276 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 LINGO2Q7L985 606 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM158Q8WZ71 300 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 SLC25A36Q96CQ1 311 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 ITCHQ96J02 903 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 MAELQ96JY0 434 aaKnown RBP18.36■□□□□ 0.53
COL9A3-207ENST00000467819 SPATA9Q9BWV2 254 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 BEX2Q9BXY8 128 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 RMND5AQ9H871 391 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 OBP2BQ9NPH6 170 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 RASD1Q9Y272 281 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 FKBP7Q9Y680 259 aa18.36■□□□□ 0.53
COL9A3-207ENST00000467819 A0A096LPE4 126 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 A0A0G2JPF8 293 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 A0A1W2PPZ6 126 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM229AB2RXF0 380 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 HNRNPCL2B2RXH8 293 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 HNRNPCL3B7ZW38 293 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 SLCO1B7G3V0H7 640 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 NR5A2O00482 541 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 PHF1O43189 567 aaPredicted RBP18.35■□□□□ 0.53
COL9A3-207ENST00000467819 HNRNPCL1O60812 293 aaKnown RBP18.35■□□□□ 0.53
COL9A3-207ENST00000467819 NPIPB7O75200 414 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 UPK3AO75631 287 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 AHSA1O95433 338 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 HNRNPCL4P0DMR1 293 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 PDLIM4P50479 330 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 SNRPD2P62316 118 aaKnown RBP18.35■□□□□ 0.53
COL9A3-207ENST00000467819 LSM11P83369 360 aaKnown RBP eCLIP18.35■□□□□ 0.538e-10■■□□□ 12.6
COL9A3-207ENST00000467819 HOXC5Q00444 222 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 GGTLC2Q14390 218 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 CARTPTQ16568 116 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 ZSWIM7Q19AV6 140 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 CROCCP2Q86T23 111 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 EPHX4Q8IUS5 362 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 KDM8Q8N371 416 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 OR9I1Q8NGQ6 314 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 STK35Q8TDR2 534 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 BOD1Q96IK1 185 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 ARMC7Q9H6L4 198 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 ZIM2Q9NZV7 527 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 PRDM4Q9UKN5 801 aa18.35■□□□□ 0.53
COL9A3-207ENST00000467819 A0A096LPI6 279 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 CRYAAP02489 173 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 NUDT7P0C024 238 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 PNMTP11086 282 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 GTF2E2P29084 291 aaKnown RBP18.34■□□□□ 0.53
COL9A3-207ENST00000467819 RPS5P46782 204 aaKnown RBP18.34■□□□□ 0.53
COL9A3-207ENST00000467819 POLR2JP52435 117 aaKnown RBP18.34■□□□□ 0.53
COL9A3-207ENST00000467819 ZNF311Q5JNZ3 666 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 VHLLQ6RSH7 139 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 SLC46A3Q7Z3Q1 461 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 MAVSQ7Z434 540 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 ANKS4BQ8N8V4 417 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 BCL2L2Q92843 193 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-207ENST00000467819 OR52B2Q96RD2 323 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 VRK1Q99986 396 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-207ENST00000467819 PIMREGQ9BSJ6 248 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 KATNB1Q9BVA0 655 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 CA10Q9NS85 328 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 TMEM160Q9NX00 188 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 RAB21Q9UL25 225 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 IFT52Q9Y366 437 aa18.34■□□□□ 0.53
COL9A3-207ENST00000467819 OR6C65A6NJZ3 312 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 UBDO15205 165 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 CECR9P0C854 216 aa18.33■□□□□ 0.52
COL9A3-207ENST00000467819 SERPINF1P36955 418 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms