RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 SLC51BQ86UW2 128 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 LYSMD2Q8IV50 215 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 HS3ST5Q8IZT8 346 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 ZNF566Q969W8 418 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 C7orf34Q96L11 122 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MBOAT4Q96T53 435 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 GABARAPL3Q9BY60 117 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 DNAJC27Q9NZQ0 273 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 C19orf67A6NJJ6 358 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 VSTM2BA6NLU5 285 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 OR6C76A6NM76 312 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 ZNF670-ZNF695F2Z2N8 137 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 SYT5O00445 386 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 ZNF749O43361 778 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 RAD1O60671 282 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 CYB5AP00167 134 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 SLC35E2P0CK97 266 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 EDNRAP25101 427 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MVDP53602 400 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 P2RX3P56373 397 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 SELENOVP59797 346 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 CCL7P80098 99 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 RASGEF1BQ0VAM2 473 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MAD2L1BPQ15013 274 aaPredicted RBP7.08□□□□□ -1.28
USP54-210ENST00000466048 ELAVL1Q15717 326 aaKnown RBP7.08□□□□□ -1.28
USP54-210ENST00000466048 STK11Q15831 433 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 ABCA11PQ4W5N1 156 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 NKAIN2Q5VXU1 208 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 STEAP3Q658P3 488 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 C5orf46Q6UWT4 87 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 DGLUCYQ7Z3D6 616 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 ZNF283Q8N7M2 679 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 OR56B4Q8NH76 319 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 SLC38A5Q8WUX1 472 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MMP28Q9H239 520 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 RANGRFQ9HD47 186 aaPredicted RBP7.08□□□□□ -1.28
USP54-210ENST00000466048 PILRBQ9UKJ0 227 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 IGHV1OR21-1A0A087WYE8 117 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 A0A1W2PR48 441 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 OR6C65A6NJZ3 312 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 GLOD5A6NK44 160 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 WASHC1A8K0Z3 465 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MSR1P21757 451 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 SSR4P51571 173 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 PEA15Q15121 130 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MPEG1Q2M385 716 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 TMEM69Q5SWH9 247 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 NRARPQ7Z6K4 114 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 BTF3L4Q96K17 158 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 MED31Q9Y3C7 131 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 PCDHGA8Q9Y5G5 932 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 CROCCQ5TZA2 2017 aa7.08□□□□□ -1.28
USP54-210ENST00000466048 RP1L1Q8IWN7 2480 aaPredicted RBP7.08□□□□□ -1.28
USP54-210ENST00000466048 B4E171 279 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 SGK494L7N484 410 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 TXNL1O43396 289 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 GALR3O60755 368 aaPredicted RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 FARS2O95363 451 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 UCHL1P09936 223 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 OR12D1P0DN82 309 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ZNF35P13682 527 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 RBMXP38159 391 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 TSPAN7P41732 249 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 TRAM2Q15035 370 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 FAM69BQ5VUD6 431 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 PLAG1Q6DJT9 500 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CNIH2Q6PI25 160 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 PRSS42Q7Z5A4 293 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CLDN22Q8N7P3 220 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 TM4SF19Q96DZ7 209 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ELP4Q96EB1 424 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 GPR87Q9BY21 358 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 EIF5A2Q9GZV4 153 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 LHX9Q9NQ69 397 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 C13orf42A0A1B0GVH6 325 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 hCG_1807616A0A1W2PRN6 198 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ARPC5O15511 151 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 OPN1SWP03999 348 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CPMP14384 443 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CSRP1P21291 193 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 FUT4P22083 530 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 PPP1R8Q12972 351 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 BAMBIQ13145 260 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 COL9A2Q14055 689 aaPredicted RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 OPCMLQ14982 345 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 GSG1LQ6UXU4 331 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ZNF793Q6ZN11 406 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ABHD12BQ7Z5M8 362 aaPredicted RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 PITX2Q99697 317 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 KCNJ16Q9NPI9 418 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 ATG4BQ9Y4P1 393 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 RBM7Q9Y580 266 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 COL4A2P08572 1712 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CPSF4LA6NMK7 179 aaKnown RBP7.07□□□□□ -1.28
USP54-210ENST00000466048 C21orf140B9A014 251 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 TSPAN15O95858 294 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 LCKP06239 509 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 UBL4AP11441 157 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 CKMT1AP12532 417 aa7.07□□□□□ -1.28
USP54-210ENST00000466048 MSX1P28360 303 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms