RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 BCL2L2Q92843 193 aaPredicted RBP11.58□□□□□ -0.56
HMGB3-204ENST00000448905 PKNOX2Q96KN3 472 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 SORCS2Q96PQ0 1159 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 TMEM109Q9BVC6 243 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 PRR14Q9BWN1 585 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 MEAF6Q9HAF1 191 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 RLIMQ9NVW2 624 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 P2RX2Q9UBL9 471 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 PCDHB14Q9Y5E9 798 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 STAB1Q9NY15 2570 aa11.58□□□□□ -0.56
HMGB3-204ENST00000448905 ARPC4-TTLL3A0A0A6YYG9 625 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 AHSA1O95433 338 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 ANP32DO95626 131 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 IL6P05231 212 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 GSNP06396 782 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 GKN3PP0CG01 181 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 ZNF43P17038 809 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 RPS4Y1P22090 263 aaKnown RBP11.57□□□□□ -0.56
HMGB3-204ENST00000448905 IGFBP5P24593 272 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 GTF2E2P29084 291 aaKnown RBP11.57□□□□□ -0.56
HMGB3-204ENST00000448905 CRATP43155 626 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 PPOXP50336 477 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 CHN2P52757 468 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 UFM1P61960 85 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 NAAAQ02083 359 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 C1DQ13901 141 aaKnown RBP11.57□□□□□ -0.56
HMGB3-204ENST00000448905 ADIPOQQ15848 244 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 C1orf140Q5VVS0 124 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 PRAMEF8Q5VWM4 474 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 PRAMEF7Q5VXH5 474 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 OGFOD2Q6N063 350 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 ANKS4BQ8N8V4 417 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 MFSD8Q8NHS3 518 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 STK35Q8TDR2 534 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 LINC00470Q9BZP3 86 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 PLK3Q9H4B4 646 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 SSU72Q9NP77 194 aaKnown RBP11.57□□□□□ -0.56
HMGB3-204ENST00000448905 KCNK9Q9NPC2 374 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 IFT52Q9Y366 437 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 MXRA5Q9NR99 2828 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 ABCA1O95477 2261 aa11.57□□□□□ -0.56
HMGB3-204ENST00000448905 IGHV4-61A0A0C4DH41 118 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 A0A0G2JPF8 293 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 SLC35F4A4IF30 521 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 TRPC5OSA6NMA1 111 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HNRNPCL2B2RXH8 293 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HNRNPCL3B7ZW38 293 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 OR2T1O43869 369 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HNRNPCL1O60812 293 aaKnown RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HNRNPCL4P0DMR1 293 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 DAOP14920 347 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 CBR1P16152 277 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 NPR2P20594 1047 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 PCMT1P22061 227 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 ARR3P36575 388 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 SRP14P37108 136 aaKnown RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 ACAA2P42765 397 aaKnown RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 SELENOPP49908 381 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 ROR2Q01974 943 aaKnown RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 PLAURQ03405 335 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 BNIP2Q12982 314 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 KRT71Q3SY84 523 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 VRK2Q86Y07 508 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 RFLNBQ8N5W9 214 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 NUP37Q8NFH4 326 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 PNPT1Q8TCS8 783 aaKnown RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HPS1Q92902 700 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 SLC25A36Q96CQ1 311 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 C20orf27Q9GZN8 174 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 RMND5AQ9H871 391 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 CRNNQ9UBG3 495 aaPredicted RBP11.56□□□□□ -0.56
HMGB3-204ENST00000448905 RPS6KB2Q9UBS0 482 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 HAO1Q9UJM8 370 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 SPEF1Q9Y4P9 236 aa11.56□□□□□ -0.56
HMGB3-204ENST00000448905 FREM1Q5H8C1 2179 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 A0A096LPE4 126 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 A0A1W2PPZ6 126 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 RPL36A-HNRNPH2H7BZ11 118 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 NR5A2O00482 541 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 TCF21O43680 179 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SLC43A1O75387 559 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SLC22A3O75751 556 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 STAMBPO95630 424 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 CECR9P0C854 216 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 VSNL1P62760 191 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SRSF2Q01130 221 aaKnown RBP11.55□□□□□ -0.56
HMGB3-204ENST00000448905 CR1LQ2VPA4 569 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 COX20Q5RI15 118 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 RNF220Q5VTB9 566 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 IL17RELQ6ZVW7 336 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 NET1Q7Z628 596 aaPredicted RBP11.55□□□□□ -0.56
HMGB3-204ENST00000448905 EPHX4Q8IUS5 362 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 GPR137CQ8N3F9 429 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 LINC01356Q8N9X3 169 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 TEX37Q96LM6 180 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SORT1Q99523 831 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 PAIP2Q9BPZ3 127 aaKnown RBP11.55□□□□□ -0.56
HMGB3-204ENST00000448905 SPATA9Q9BWV2 254 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 BPESC1Q9GZL8 116 aa11.55□□□□□ -0.56
HMGB3-204ENST00000448905 CENPHQ9H3R5 247 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms