RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 PRPF38BQ5VTL8 546 aaKnown RBP12.97□□□□□ -0.33
LIMD1-202ENST00000440097 GPR139Q6DWJ6 353 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 MZT2AQ6P582 158 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 CD200R1LQ6Q8B3 271 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 ZNF550Q7Z398 422 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 HOXB13Q92826 284 aaPredicted RBP12.97□□□□□ -0.33
LIMD1-202ENST00000440097 FGF11Q92914 225 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 RNF32Q9H0A6 362 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 EMC7Q9NPA0 242 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 EXTL2Q9UBQ6 330 aa12.97□□□□□ -0.33
LIMD1-202ENST00000440097 ASCC3Q8N3C0 2202 aaKnown RBP12.96□□□□□ -0.33
LIMD1-202ENST00000440097 KLF4O43474 513 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 HMGN1P05114 100 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 SSTR2P30874 369 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 RORAP35398 523 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 EFNB1P98172 346 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 EXOSC2Q13868 293 aaKnown RBP12.96□□□□□ -0.33
LIMD1-202ENST00000440097 GALEQ14376 348 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 FCRLBQ6BAA4 426 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 GUSBP11Q6P575 273 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 OAFQ86UD1 273 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 CPOQ8IVL8 374 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 BBS1Q8NFJ9 593 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 NEIL3Q8TAT5 605 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 PMEPA1Q969W9 287 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 SORCS2Q96PQ0 1159 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 OR1F2PQ96R84 312 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 NRSN2Q9GZP1 204 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 MMACHCQ9Y4U1 282 aa12.96□□□□□ -0.33
LIMD1-202ENST00000440097 A0A0B4J2E0 115 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 C2orf92A0A1B0GVN3 265 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 A0A1B0GX12 115 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 A0A1B0GX78 115 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 SERINC4A6NH21 518 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 RCBTB2O95199 551 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 EPHA8P29322 1005 aaPredicted RBP12.96□□□□□ -0.34
LIMD1-202ENST00000440097 PSMD4P55036 377 aaKnown RBP12.96□□□□□ -0.34
LIMD1-202ENST00000440097 RPS7P62081 194 aaKnown RBP12.96□□□□□ -0.34
LIMD1-202ENST00000440097 RAB40BQ12829 278 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 IKZF1Q13422 519 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 DSG2Q14126 1118 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 COL28A1Q2UY09 1125 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 KLHL12Q53G59 568 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 HLA-DQA1Q5Y7H0 255 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 PLBD1Q6P4A8 553 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 LHFPL3Q86UP9 236 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 PHOSPHO1Q8TCT1 267 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 SLC2A12Q8TD20 617 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 SLC41A2Q96JW4 573 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 ENKD1Q9H0I2 346 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 NXF5Q9H1B4 397 aaKnown RBP12.96□□□□□ -0.34
LIMD1-202ENST00000440097 MEPEQ9NQ76 525 aaPredicted RBP12.96□□□□□ -0.34
LIMD1-202ENST00000440097 ADAM30Q9UKF2 790 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 TMEM5Q9Y2B1 443 aa12.96□□□□□ -0.34
LIMD1-202ENST00000440097 LIMS3P0CW19 117 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 LIMS4P0CW20 117 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 TFPIP10646 304 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ANXA3P12429 323 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CXCL3P19876 107 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ACAA2P42765 397 aaKnown RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 SLC37A1P57057 533 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 FOXL2P58012 376 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 SLC25A30Q5SVS4 291 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 FAM122CQ6P4D5 195 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 WDR74Q6RFH5 385 aaPredicted RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 KIRREL2Q6UWL6 708 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CXXC5Q7LFL8 322 aaKnown RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CARFQ8N187 725 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 OR4F15Q8NGB8 312 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 LHFPL5Q8TAF8 219 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ADOQ96SZ5 270 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ARHGAP9Q9BRR9 750 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 DUSP23Q9BVJ7 150 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ABCG5Q9H222 651 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 GHITMQ9H3K2 345 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 MED20Q9H944 212 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 FGF20Q9NP95 211 aaPredicted RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ISYNA1Q9NPH2 558 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 NUDT15Q9NV35 164 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ZNF223Q9UK11 482 aaPredicted RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 SPTBN2O15020 2390 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CD8B2A6NJW9 211 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ATP6V1G2-DDX39BF2Z307 99 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 H3BMH7 237 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 GABRPO00591 440 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 SCDO00767 359 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 LAMTOR5O43504 91 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 MPC2O95563 127 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 DHFRP00374 187 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 SYPP08247 313 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ZGLP1P0C6A0 271 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CD8BP10966 210 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 PAICSP22234 425 aaKnown RBP12.95□□□□□ -0.34
LIMD1-202ENST00000440097 GRK1Q15835 563 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ZNF141Q15928 474 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 HLA-BQ31612 363 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 CLLU1Q5K131 121 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ULK3Q6PHR2 472 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 GPALPP1Q8IXQ4 340 aa12.95□□□□□ -0.34
LIMD1-202ENST00000440097 ARIH2OSQ8N7S6 290 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms