RNA–Protein interactions for RNA: ENST00000429846.1

MSH5-208, Transcript of mutS homolog 5, humanhuman

TSL 3

Gene MSH5, Length 616 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-208ENST00000429846 KCNK17Q96T54 332 aa13□□□□□ -0.33
MSH5-208ENST00000429846 PAIP2Q9BPZ3 127 aaKnown RBP13□□□□□ -0.33
MSH5-208ENST00000429846 RMND5AQ9H871 391 aa13□□□□□ -0.33
MSH5-208ENST00000429846 TPT1P8Q9HAU6 139 aa13□□□□□ -0.33
MSH5-208ENST00000429846 FBXO9Q9UK97 447 aaPredicted RBP13□□□□□ -0.33
MSH5-208ENST00000429846 ZNF232Q9UNY5 417 aa13□□□□□ -0.33
MSH5-208ENST00000429846 MOKQ9UQ07 419 aa13□□□□□ -0.33
MSH5-208ENST00000429846 RASD1Q9Y272 281 aa13□□□□□ -0.33
MSH5-208ENST00000429846 ZNF443Q9Y2A4 671 aaPredicted RBP13□□□□□ -0.33
MSH5-208ENST00000429846 IFT52Q9Y366 437 aa13□□□□□ -0.33
MSH5-208ENST00000429846 ARPC4-TTLL3A0A0A6YYG9 625 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 A0A0G2JPF8 293 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 TMEM229AB2RXF0 380 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 HNRNPCL2B2RXH8 293 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 HNRNPCL3B7ZW38 293 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 HNRNPCL1O60812 293 aaKnown RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 NPIPB7O75200 414 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 SNNO75324 88 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 CRYAAP02489 173 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 HNRNPCL4P0DMR1 293 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 IGHV4-31P0DP07 118 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 ETFAP13804 333 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 HOXB1P14653 301 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 ZNF16P17020 682 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 NCF2P19878 526 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 GZMKP49863 264 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 PDLIM4P50479 330 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 SH3BGRP55822 239 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 UBE2NP61088 152 aaKnown RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 LSM11P83369 360 aaKnown RBP eCLIP12.99□□□□□ -0.33
MSH5-208ENST00000429846 ATG16L1Q676U5 607 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 CREB3L2Q70SY1 520 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 PHC2Q8IXK0 858 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 ANKK1Q8NFD2 765 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 MAGEE2Q8TD90 523 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 SLC38A5Q8WUX1 472 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 NANOS1Q8WY41 292 aaKnown RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 C3orf49Q96BT1 292 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 FBXO17Q96EF6 278 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 TMEM19Q96HH6 336 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 ALKBH3Q96Q83 286 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 PIMREGQ9BSJ6 248 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 SPATA9Q9BWV2 254 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 BEX2Q9BXY8 128 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 LINC00470Q9BZP3 86 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 WDR55Q9H6Y2 383 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 SLC6A13Q9NSD5 602 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 ZIM2Q9NZV7 527 aa12.99□□□□□ -0.33
MSH5-208ENST00000429846 CRNNQ9UBG3 495 aaPredicted RBP12.99□□□□□ -0.33
MSH5-208ENST00000429846 MALRD1Q5VYJ5 2156 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.98□□□□□ -0.332e-7■■■■■ 27.8
MSH5-208ENST00000429846 ANK3Q12955 4377 aaKnown RBP12.98□□□□□ -0.33
MSH5-208ENST00000429846 IGHV1-18A0A0C4DH31 117 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 VWC2LB2RUY7 222 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 KLF11O14901 512 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 AHSA1O95433 338 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 GTF2E2P29084 291 aaKnown RBP12.98□□□□□ -0.33
MSH5-208ENST00000429846 THBS2P35442 1172 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 SELENOPP49908 381 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 BNIP2Q12982 314 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 MST1LQ2TV78 715 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 NXNQ6DKJ4 435 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 NIPAL3Q6P499 406 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 FAM169BQ8N8A8 192 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 ANKRD42Q8N9B4 389 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 MFSD8Q8NHS3 518 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 ITCHQ96J02 903 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 SORCS2Q96PQ0 1159 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 PARD6BQ9BYG5 372 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 SHARPINQ9H0F6 387 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 SDR39U1Q9NRG7 319 aaPredicted RBP12.98□□□□□ -0.33
MSH5-208ENST00000429846 CA10Q9NS85 328 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.98□□□□□ -0.33
MSH5-208ENST00000429846 RCE1Q9Y256 329 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 V9GYY5 206 aaPredicted RBP12.98□□□□□ -0.33
MSH5-208ENST00000429846 CUBNO60494 3623 aa12.98□□□□□ -0.33
MSH5-208ENST00000429846 LOC390937A0A1W2PQ73 354 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 TMEM120BA0PK00 339 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 B9A039 149 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 PHF1O43189 567 aaPredicted RBP12.97□□□□□ -0.33
MSH5-208ENST00000429846 LMX1BO60663 402 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 LGI1O95970 557 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 KITP10721 976 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 SERPINF1P36955 418 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 SLC18A1P54219 525 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 WDR4P57081 412 aaKnown RBP12.97□□□□□ -0.33
MSH5-208ENST00000429846 NAAAQ02083 359 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 FADDQ13158 208 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 EFNB3Q15768 340 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 ANKRD16Q6P6B7 361 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 C5orf46Q6UWT4 87 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 SLC46A3Q7Z3Q1 461 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 SERPINA11Q86U17 422 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 EPHX4Q8IUS5 362 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 CLIP4Q8N3C7 705 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 BCL2L2Q92843 193 aaPredicted RBP12.97□□□□□ -0.33
MSH5-208ENST00000429846 RAD21L1Q9H4I0 556 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 C12orf10Q9HB07 376 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 RAB21Q9UL25 225 aa12.97□□□□□ -0.33
MSH5-208ENST00000429846 FTCDNL1E5RQL4 147 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms