RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 HIF3AQ9Y2N7 669 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC6A5Q9Y345 797 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 CSAG2Q9Y5P2 127 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 RIIAD1A6NNX1 92 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 E9PQ18 207 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 M0R082 166 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 SULT2B1O00204 365 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TFECO14948 347 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 RNF13O43567 381 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 GLSO94925 669 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 PPP1R3DO95685 299 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ADORA3P0DMS8 318 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 AQP2P41181 271 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 PCYT1AP49585 367 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ISL1P61371 349 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 RPS4XP62701 263 aaKnown RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 CSNK2A1P68400 391 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 LTBQ06643 244 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF169Q14929 603 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 SGCBQ16585 318 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 TBR1Q16650 682 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 HYAL4Q2M3T9 481 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 PDSS1Q5T2R2 415 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 UGT2A3Q6UWM9 527 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 IGFL3Q6UXB1 125 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 DPY19L2P2Q6ZN68 376 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ENTHD1Q8IYW4 607 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 SCAIQ8N9R8 606 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 OR8J1Q8NGP2 316 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 OR4Q3Q8NH05 313 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF417Q8TAU3 575 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 CNIH3Q8TBE1 160 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ZHX1-C8orf76Q96EF9 292 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 KLHL15Q96M94 604 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 Q96MT0 163 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF587Q96SQ5 575 aaPredicted RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 POLDIP3Q9BY77 421 aaKnown RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 LDAHQ9H6V9 325 aa15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 MRPL39Q9NYK5 338 aaKnown RBP15.43■□□□□ 0.06
CCDC28B-202ENST00000421922 A0A1W2PNR3 127 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 MAGEA13PA6NCF6 341 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 TMEM8BA6NDV4 472 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 LIPT2A6NK58 231 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 C11orf98E9PRG8 122 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 M0R129 80 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 EFNA2O43921 213 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF24P17028 368 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 AHCYP23526 432 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC35A1P78382 337 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 RPL18Q07020 188 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC10A1Q14973 349 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 RBM48Q5RL73 367 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 ACSM5Q6NUN0 579 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 THSD4Q6ZMP0 1018 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 IGFN1Q86VF2 1251 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 TCEANCQ8N8B7 351 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 HDAC2Q92769 488 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 ERMAPQ96PL5 475 aaPredicted RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 IL4I1Q96RQ9 567 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 ARHGAP9Q9BRR9 750 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 YTHDF1Q9BYJ9 559 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 CHST11Q9NPF2 352 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 SCN3BQ9NY72 215 aa15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 DSPP15924 2871 aaKnown RBP15.42■□□□□ 0.06
CCDC28B-202ENST00000421922 DMXL2Q8TDJ6 3036 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 SNTNA6NMZ2 147 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 MCIDASD6RGH6 385 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 FTCDNL1E5RQL4 147 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 M0R3G1 203 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 SEC14L5O43304 696 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 SMNDC1O75940 238 aaKnown RBP eCLIP15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 PMS2P2O95744 297 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 IMPDH2P12268 514 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 ZNF3P17036 446 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 UQCRC1P31930 480 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 MLLT10P55197 1068 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 FXYD6P3P58550 94 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 B3GALT5-AS1P59052 145 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 CTXN1P60606 82 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 TEKQ02763 1124 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 CDK5R2Q13319 367 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 CTU2Q2VPK5 515 aaKnown RBP15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 C6orf141Q5SZD1 244 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 H1FNTQ75WM6 255 aaPredicted RBP15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 CCDC71Q8IV32 467 aaPredicted RBP15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 LNX2Q8N448 690 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 MOSPD2Q8NHP6 518 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 SLC39A7Q92504 469 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 EXTL1Q92935 676 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 KATNB1Q9BVA0 655 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 INIPQ9NRY2 104 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 KLHL21Q9UJP4 597 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 TRAPPC4Q9Y296 219 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 PCDHGB5Q9Y5G0 923 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 FREM2Q5SZK8 3169 aa15.41■□□□□ 0.06
CCDC28B-202ENST00000421922 A0A087WV48 116 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 BHLHE40O14503 412 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 EIF1AYO14602 144 aaKnown RBP15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 SURF4O15260 269 aa15.4■□□□□ 0.06
CCDC28B-202ENST00000421922 TLX2O43763 284 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms