RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CPEP16870 476 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ATP1B3P54709 279 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 TBPL1P62380 186 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SIRPAP78324 504 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SP2Q02086 613 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 OR2G3Q8NGZ4 309 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 OR4K13Q8NH42 304 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 TMEM239Q8WW34 195 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 SAMD8Q96LT4 415 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 P2RX7Q99572 595 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF768Q9H5H4 540 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 AKIP1Q9NQ31 210 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 IGLV3-22A0A075B6J6 115 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 B4DEV8 164 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 NRP1O14786 923 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 POP7O75817 140 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 DPP4P27487 766 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 EEF1A2Q05639 463 aaKnown RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ZP2Q05996 745 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 ESAMQ96AP7 390 aa12.05□□□□□ -0.48
COL6A3-206ENST00000409809 NOL4LQ96MY1 436 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-206ENST00000409809 A0A0A6YYJ9 748 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FAM221BA6H8Z2 402 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ST8SIA3O43173 380 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TGM5O43548 720 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TNFP01375 233 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SMIM18P0DKX4 95 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 PTHLHP12272 177 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TCTAP57738 103 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 MAT1AQ00266 395 aaKnown RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SGIP1Q9BQI5 828 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 RAB18Q9NP72 206 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 GLTPD2A6NH11 291 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 NME2P22392 152 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 GCSHP23434 173 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FAM69BQ5VUD6 431 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 OR4C11Q6IEV9 310 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FCRLAQ7L513 359 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FBXO27Q8NI29 283 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ST8SIA2Q92186 375 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SLC41A2Q96JW4 573 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 DPH2Q9BQC3 489 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 EDEM2Q9BV94 578 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 NECAP2Q9NVZ3 263 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 CEBPZOSA8MTT3 80 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 IL33O95760 270 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ACKR3P25106 362 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 CXCL9Q07325 125 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SLC22A6Q4U2R8 563 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 C9orf131Q5VYM1 1079 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ISCA2Q86U28 154 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FUBP1Q96AE4 644 aaKnown RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 PBX4Q9BYU1 374 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 CD84Q9UIB8 345 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ZNF891A8MT65 544 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 DVL1O14640 695 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SRMP19623 302 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 DVL1P1P54792 670 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 PPP1CBP62140 327 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 RNLSQ5VYX0 342 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SPATC1Q76KD6 591 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 CPXM2Q8N436 756 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 NAXEQ8NCW5 288 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 DOCK11Q5JSL3 2073 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TCAPO15273 167 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 PGBD5Q8N414 524 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 ENKD1Q9H0I2 346 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 SPACA1Q9HBV2 294 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TM7SF3Q9NS93 570 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 DDX60Q8IY21 1712 aaKnown RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 GABRB1P18505 474 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TAS2R45P59539 299 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TIGITQ495A1 244 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 COMMD6Q7Z4G1 85 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 FYTTD1Q96QD9 318 aaKnown RBP12.04□□□□□ -0.48
COL6A3-206ENST00000409809 IGSF5Q9NSI5 407 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 POU3F4P49335 361 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 NOGQ13253 232 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TIGD5Q53EQ6 642 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 BPIFCQ8NFQ6 507 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 TIAM2Q8IVF5 1701 aa12.04□□□□□ -0.48
COL6A3-206ENST00000409809 KDM3BQ7LBC6 1761 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 TDRD6O60522 2096 aaKnown RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 HMGCLP35914 325 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 PDGFRLQ15198 375 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CDHR3Q6ZTQ4 885 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 HSD17B13Q7Z5P4 300 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-206ENST00000409809 MSRAQ9UJ68 235 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 URGCP-MRPS24S4R325 110 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SLC38A8A6NNN8 435 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CTRB1P17538 263 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 EPHA1P21709 976 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 ITGB8P26012 769 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CTRB2Q6GPI1 263 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 CMTM2Q8TAZ6 248 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 KCNJ15Q99712 375 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 PDE7BQ9NP56 450 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 SYT5O00445 386 aa12.03□□□□□ -0.48
COL6A3-206ENST00000409809 HOXC11O43248 304 aaPredicted RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms