RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SLC2A9Q9NRM0 540 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 LIN7CQ9NUP9 197 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PLLPQ9Y342 182 aa6.77□□□□□ -1.33
SCN9A-202ENST00000409435 MYH9P35579 1960 aaKnown RBP6.77□□□□□ -1.33
SCN9A-202ENST00000409435 PDGFAP04085 211 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 DAP3P51398 398 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 HNRNPA3P51991 378 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF750Q32MQ0 723 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 NHSL2Q5HYW2 709 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 METTL11BQ5VVY1 283 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 DBX2Q6ZNG2 339 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 PIWIL3Q7Z3Z3 882 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 BAGE3Q86Y29 109 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 BAGE2Q86Y30 109 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SAMD12Q8N8I0 201 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 MORN4Q8NDC4 146 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 INTS12Q96CB8 462 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ASB9Q96DX5 294 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 LCORQ96JN0 433 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 LRFN5Q96NI6 719 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 MS4A4EQ96PG1 132 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CGREF1Q99674 301 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 MECRQ9BV79 373 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ELOVL3Q9HB03 270 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF355PQ9NSJ1 428 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 GXYLT2A0PJZ3 443 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 GOSR2O14653 212 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CRISP1P54107 249 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 GDF10P55107 478 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 METRNLQ641Q3 311 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 WDTC1Q8N5D0 677 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 COMMD1Q8N668 190 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF441Q8N8Z8 693 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 THEM6Q8WUY1 208 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OR2M2Q96R28 347 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OCSTAMPQ9BR26 566 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 DNTTIP1Q9H147 329 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SERTAD4Q9NUC0 356 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 TAS2R16Q9NYV7 291 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SLC17A7Q9P2U7 560 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 EXOSC1Q9Y3B2 195 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 A0A0U1RQS6 177 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CTNSO60931 367 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 H2BFMP0C1H6 154 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 HIST1H1TP22492 207 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SLC6A6P31641 620 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 WNT7BP56706 349 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CLDN6P56747 220 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 GRB2P62993 217 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 RUNX2Q13950 521 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 FAM174BQ3ZCQ3 159 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 C19orf35Q6ZS72 473 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 PXKQ7Z7A4 578 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 NAGSQ8N159 534 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 JAGN1Q8N5M9 183 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 NPWQ8N729 165 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OR52H1Q8NGJ2 320 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 NFKBIDQ8NI38 313 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ADAMTS14Q8WXS8 1223 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 BCL7BQ9BQE9 202 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ULBP2Q9BZM5 246 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 GALPQ9UBC7 116 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 KIF25Q9UIL4 384 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 FER1L6Q2WGJ9 1857 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 IGHV5-10-1A0A0J9YXX1 117 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 LCATP04180 440 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 ST6GAL1P15907 406 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 HOXD13P35453 343 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 MLLT10P55197 1068 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 KIAA0141Q14154 515 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 RSU1Q15404 277 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 WBP2Q969T9 261 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CACNG6Q9BXT2 260 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 MFFQ9GZY8 342 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 UBQLN4Q9NRR5 601 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 TAS2R8Q9NYW2 309 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 INTS6Q9UL03 887 aaKnown RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 B3GNT3Q9Y2A9 372 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 NFS1Q9Y697 457 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 WNK3Q9BYP7 1800 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OLIG2Q13516 323 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 CHRFAM7AQ494W8 412 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SLC16A14Q7RTX9 510 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 LINC00471Q8N535 108 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 FAM83FQ8NEG4 500 aaPredicted RBP6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OR7G3Q8NG95 312 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 HPSE2Q8WWQ2 592 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 SLC6A7Q99884 636 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 TEX101Q9BY14 249 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 KCNIP1Q9NZI2 227 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 OAZ3Q9UMX2 235 aa6.76□□□□□ -1.33
SCN9A-202ENST00000409435 RNASET2O00584 256 aaKnown RBP6.75□□□□□ -1.33
SCN9A-202ENST00000409435 AGPAT2O15120 278 aa6.75□□□□□ -1.33
SCN9A-202ENST00000409435 HOXD4P09016 255 aaPredicted RBP6.75□□□□□ -1.33
SCN9A-202ENST00000409435 PRF1P14222 555 aa6.75□□□□□ -1.33
SCN9A-202ENST00000409435 ZNF16P17020 682 aaPredicted RBP6.75□□□□□ -1.33
SCN9A-202ENST00000409435 NBL1P41271 181 aa6.75□□□□□ -1.33
SCN9A-202ENST00000409435 KIR2DL1P43626 348 aaPredicted RBP6.75□□□□□ -1.33
SCN9A-202ENST00000409435 TAS2R20P59543 309 aa6.75□□□□□ -1.33
SCN9A-202ENST00000409435 PHYHD1Q5SRE7 291 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms