RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 SRSF1Q07955 248 aaKnown RBP eCLIP26.17■■□□□ 1.78
USP42-202ENST00000404008 HSPB2Q16082 182 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 MAMDC2Q7Z304 686 aaPredicted RBP26.17■■□□□ 1.78
USP42-202ENST00000404008 ZNF417Q8TAU3 575 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 BPIFA2Q96DR5 249 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 SGTBQ96EQ0 304 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 GMPPAQ96IJ6 420 aaPredicted RBP26.17■■□□□ 1.78
USP42-202ENST00000404008 ALPK1Q96QP1 1244 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 ZNF587Q96SQ5 575 aaPredicted RBP26.17■■□□□ 1.78
USP42-202ENST00000404008 NANSQ9NR45 359 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 ARMC1Q9NVT9 282 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 VNN3Q9NY84 501 aa26.17■■□□□ 1.78
USP42-202ENST00000404008 ING1Q9UK53 422 aaPredicted RBP26.17■■□□□ 1.78
USP42-202ENST00000404008 SH3PXD2BA1X283 911 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 IFI30P13284 250 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 RASGEF1BQ0VAM2 473 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 FOXF2Q12947 444 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 GUSBP1Q15486 140 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 RRM2BQ7LG56 351 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 SCAIQ8N9R8 606 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 PSD2Q9BQI7 771 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 ASPNQ9BXN1 380 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 REEP1Q9H902 201 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 GP6Q9HCN6 339 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 CHST11Q9NPF2 352 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 GLRX2Q9NS18 164 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 MRPL39Q9NYK5 338 aaKnown RBP26.16■■□□□ 1.78
USP42-202ENST00000404008 KLHL9Q9P2J3 617 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 KLHL13Q9P2N7 655 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 ZNF229Q9UJW7 825 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 RNF6Q9Y252 685 aa26.16■■□□□ 1.78
USP42-202ENST00000404008 DIDO1Q9BTC0 2240 aaKnown RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 USP9XQ93008 2570 aaPredicted RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 ZNF716A6NP11 495 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 ANKRD65E5RJM6 399 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 TNFRSF11BO00300 401 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 SS18L1O75177 396 aaPredicted RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 OR7A10O76100 309 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 PLGP00747 810 aaPredicted RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 CRHP06850 196 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 EXOC3L2Q2M3D2 409 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 CCDC71Q8IV32 467 aaPredicted RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 MCEMP1Q8IX19 187 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 LRRC17Q8N6Y2 441 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 ADPRHL1Q8NDY3 354 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 OR4K5Q8NGD3 323 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 OR4C15Q8NGM1 316 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 LIPHQ8WWY8 451 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 C6orf203Q9P0P8 240 aaPredicted RBP26.15■■□□□ 1.78
USP42-202ENST00000404008 CLEC4AQ9UMR7 237 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 B3GALT5Q9Y2C3 310 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 AP4S1Q9Y587 144 aa26.15■■□□□ 1.78
USP42-202ENST00000404008 CLEC18AA5D8T8 446 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 ZG16O60844 167 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 TIPRLO75663 272 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 ASAH2BP0C7U1 165 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 CTSSP25774 331 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 SMSP52788 366 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 SLC16A1P53985 500 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 PDK3Q15120 406 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 CLEC18BQ6UXF7 455 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 H1FNTQ75WM6 255 aaPredicted RBP26.14■■□□□ 1.78
USP42-202ENST00000404008 CLEC18CQ8NCF0 446 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 BCO1Q9HAY6 547 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 TMCC3Q9ULS5 477 aa26.14■■□□□ 1.78
USP42-202ENST00000404008 SAMHD1Q9Y3Z3 626 aaKnown RBP26.14■■□□□ 1.78
USP42-202ENST00000404008 PCNX1Q96RV3 2341 aa26.14■■□□□ 1.77
USP42-202ENST00000404008 INTS1Q8N201 2190 aaKnown RBP26.14■■□□□ 1.77
USP42-202ENST00000404008 IGKV3D-15A0A087WSY6 115 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 A0A1W2PNV4 684 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 AGFG2O95081 481 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 LDLRP01130 860 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 MAKP20794 623 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 SLC17A1Q14916 467 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 MEX3DQ86XN8 651 aaKnown RBP26.13■■□□□ 1.77
USP42-202ENST00000404008 OR5J2Q8NH18 312 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 SFXN3Q9BWM7 321 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 COQ3Q9NZJ6 369 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 DNAJB9Q9UBS3 223 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 ZNF629Q9UEG4 869 aaPredicted RBP26.13■■□□□ 1.77
USP42-202ENST00000404008 RASD1Q9Y272 281 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 TMEM5Q9Y2B1 443 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 U3KQV3 271 aa26.13■■□□□ 1.77
USP42-202ENST00000404008 TNFSF13O75888 250 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 VAMP5O95183 116 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 FUT1P19526 365 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 AGTR1P30556 359 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 PPP1R8Q12972 351 aaKnown RBP26.12■■□□□ 1.77
USP42-202ENST00000404008 PMS2P3Q13401 168 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 TMEM225Q6GV28 225 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 TMPRSS11FQ6ZWK6 438 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 FAM214BQ7L5A3 538 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 TUSC5Q8IXB3 177 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 CDK20Q8IZL9 346 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 PYDC1Q8WXC3 89 aa26.12■■□□□ 1.77
USP42-202ENST00000404008 SF3B5Q9BWJ5 86 aaKnown RBP26.12■■□□□ 1.77
USP42-202ENST00000404008 WIPF3A6NGB9 483 aa26.11■■□□□ 1.77
USP42-202ENST00000404008 PLPP3O14495 311 aa26.11■■□□□ 1.77
USP42-202ENST00000404008 GNGT2O14610 69 aa26.11■■□□□ 1.77
USP42-202ENST00000404008 HNRNPRO43390 633 aaKnown RBP26.11■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms