RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 ADAMTS4O75173 837 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CYBAP13498 195 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 GDNFP39905 211 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 P2RY2P41231 377 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CSNK1A1P48729 337 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 OR7A5Q15622 319 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC22A6Q4U2R8 563 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 LDLRAD1Q5T700 205 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 TMEM72A0PK05 275 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 OR2T7P0C7T2 308 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 NFYAP23511 347 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 TAS2R46P59540 309 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SUMO1P63165 101 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC14A1Q13336 389 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF761Q86XN6 746 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 PELI3Q8N2H9 469 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 IL22RA1Q8N6P7 574 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 ZBTB44Q8NCP5 570 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 OR2T27Q8NH04 317 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 DUSP19Q8WTR2 217 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 RSC1A1Q92681 617 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC6A20Q9NP91 592 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CBLCQ9ULV8 474 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CCDC88AQ3V6T2 1871 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 URB1O60287 2271 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SULT2B1O00204 365 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CLDN6P56747 220 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 RPP30P78346 268 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 HSF1Q00613 529 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 MPEG1Q2M385 716 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CCNJQ5T5M9 372 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 PRR22Q8IZ63 422 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 C1orf87Q8N0U7 546 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 OR2T11Q8NH01 316 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC38A5Q8WUX1 472 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 RAB3CQ96E17 227 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SENP5Q96HI0 755 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 RNF170Q96K19 258 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF681Q96N22 645 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CXXC1Q9P0U4 656 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 PIAS3Q9Y6X2 628 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CICQ96RK0 1608 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 LOC102725191A0A1B0GVB3 256 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CALCRP30988 508 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 IDUAP35475 653 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 NTHL1P78549 312 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SLC7A9P82251 487 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 CHRNEQ04844 493 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 SQSTM1Q13501 440 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 EXOSC7Q15024 291 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 ENTHD1Q8IYW4 607 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 RNF175Q8N4F7 328 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 FAM160A2Q8N612 972 aaPredicted RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF768Q9H5H4 540 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 GMPR2Q9P2T1 348 aaKnown RBP9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 PGAP2Q9UHJ9 254 aa9.55□□□□□ -0.88
LIMCH1-203ENST00000396595 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 TNFSF12O43508 249 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF207O43670 478 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NCR1O76036 304 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 KCNK5O95279 499 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 ADRB1P08588 477 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SNRPBP14678 240 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 CR2P20023 1033 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 MRPL2Q5T653 305 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NXNL2Q5VZ03 156 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF765Q7L2R6 523 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 MCATQ8IVS2 390 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 OR13C2Q8NGS9 318 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SFXN2Q96NB2 322 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 ZNF582Q96NG8 517 aaPredicted RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NRIP3Q9NQ35 241 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SRPK3Q9UPE1 567 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 MOKQ9UQ07 419 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 EXO1Q9UQ84 846 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 VDAC3Q9Y277 283 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 TMEM235A6NFC5 223 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 TMEM212A6NML5 194 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SYT5O00445 386 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 CNMDO75829 334 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 XCR1P46094 333 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 BAK1Q16611 211 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 GUK1Q16774 197 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 OR7E24Q6IFN5 339 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SFXN4Q6P4A7 337 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SMIM3Q9BZL3 60 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 TMPRSS5Q9H3S3 457 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 GCM1Q9NP62 436 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 POU2F3Q9UKI9 436 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 B4DXG7 233 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 CD63P08962 238 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 APEX1P27695 318 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PTGER1P34995 402 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 EFNA3P52797 238 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SIRPAP78324 504 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SF3B4Q15427 424 aaKnown RBP eCLIP9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 NLGN4XQ8N0W4 816 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 OR1M1Q8NGA1 313 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 PHYHIPQ92561 330 aa9.54□□□□□ -0.88
LIMCH1-203ENST00000396595 SMIM14Q96QK8 99 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms