RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KRTAP27-1Q3LI81 207 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 RAET1LQ5VY80 246 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 GTF2IRD2BQ6EKJ0 949 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 XKRXQ6PP77 449 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 GTF2IRD2Q86UP8 949 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 C20orf196Q8IYI0 205 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 LILRB4Q8NHJ6 448 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 SLC26A7Q8TE54 656 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MCUR1Q96AQ8 359 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 CENPNQ96H22 339 aaPredicted RBP6.24□□□□□ -1.41
LIMA1-202ENST00000394943 PITX2Q99697 317 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 GPA33Q99795 319 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 NMNAT2Q9BZQ4 307 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 BAIAP2Q9UQB8 552 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 MED31Q9Y3C7 131 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 AP4S1Q9Y587 144 aa6.24□□□□□ -1.41
LIMA1-202ENST00000394943 A0A0G2JNJ9 132 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ELOA3DA6NLF2 546 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 BHLHE40O14503 412 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 PRRG2O14669 202 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 TNFSF11O14788 317 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 TGM6O95932 706 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 TNFRSF1BP20333 461 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 OR1E2P47887 323 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 TAS2R41P59536 307 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 PRPS1P60891 318 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ELOA3BQ3SY89 546 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 OR5M10Q6IEU7 315 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 CD163Q86VB7 1156 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 EGFL6Q8IUX8 553 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 RNF148Q8N7C7 305 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ELOA3Q8NG57 546 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF563Q8TA94 476 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 FNDC8Q8TC99 324 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ASB10Q8WXI3 467 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 OSTF1Q92882 214 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SGTBQ96EQ0 304 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SH3YL1Q96HL8 342 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 C20orf141Q9NUB4 165 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 Q9UFV3 132 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 CPSF4LA6NMK7 179 aaKnown RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KDM4EB2RXH2 506 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 GPR171O14626 319 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 YES1P07947 543 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 EPXP11678 715 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 NTF4P34130 210 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 GRK5P34947 590 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ELF3P78545 371 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 HSF1Q00613 529 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KPNB1Q14974 876 aaKnown RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 OGFRL1Q5TC84 451 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 TFAP2EQ6VUC0 442 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ZNF620Q6ZNG0 422 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 FCRLAQ7L513 359 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 FAM214BQ7L5A3 538 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 HIPK1Q86Z02 1210 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 C17orf78Q8N4C9 275 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 RELL2Q8NC24 303 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 NAXEQ8NCW5 288 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 MOGAT1Q96PD6 335 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SPOCK3Q9BQ16 436 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ALG12Q9BV10 488 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KRCC1Q9NPI7 259 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 VDAC3Q9Y277 283 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 RPH3AQ9Y2J0 694 aaPredicted RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SHISA8B8ZZ34 492 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 H0Y3Z8 333 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 DLGAP1O14490 977 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 CDC42EP2O14613 210 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 MSTNO14793 375 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 GADD45GO95257 159 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ANXA8P13928 327 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 RRM2P31350 389 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 PTDSS1P48651 473 aaKnown RBP6.23□□□□□ -1.41
LIMA1-202ENST00000394943 PCK2Q16822 640 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 B3GNT6Q6ZMB0 384 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 DPY19L2P2Q6ZN68 376 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 HDDC2Q7Z4H3 204 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KIF18BQ86Y91 864 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 OR9K2Q8NGE7 335 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 PFN4Q8NHR9 129 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 BPIFA2Q96DR5 249 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 LRGUKQ96M69 825 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ALPK1Q96QP1 1244 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KCNK17Q96T54 332 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 FNDC11Q9BVV2 318 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 ENKD1Q9H0I2 346 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 KLHL9Q9P2J3 617 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 RPS6KB2Q9UBS0 482 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SLC13A4Q9UKG4 626 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SH3GLB1Q9Y371 365 aa6.23□□□□□ -1.41
LIMA1-202ENST00000394943 SLC22A20A6NK97 555 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 TTLL8A6PVC2 850 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CIB2O75838 187 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 CHRNB4P30926 498 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 IFNGR2P38484 337 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 RFC3P40938 356 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 MLLT10P55197 1068 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 HIST1H3AP68431 136 aa6.22□□□□□ -1.41
LIMA1-202ENST00000394943 HOXC5Q00444 222 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms