RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 PIN1P1O15428 100 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 CSTAP01040 98 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 IFNA16P05015 189 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 HOXB2P14652 356 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 CCR9P51686 369 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 NANOS3P60323 173 aaKnown RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TMEM196Q5HYL7 178 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 YOD1Q5VVQ6 348 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 OR56B4Q8NH76 319 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 MOSPD2Q8NHP6 518 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 SGTBQ96EQ0 304 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ELMOD3Q96FG2 381 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 LMF1Q96S06 567 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF436Q9C0F3 470 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TAS2R10Q9NYW0 307 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ABRACLQ9P1F3 81 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 UBQLN2Q9UHD9 624 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 PEX14O75381 377 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ZFPL1O95159 310 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 COL9A1P20849 921 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 AQP2P41181 271 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 AP2S1P53680 142 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 RPS11P62280 158 aaKnown RBP eCLIP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TCTE1Q5JU00 501 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 FHL5Q5TD97 284 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TMPRSS12Q86WS5 348 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 IQCF2Q8IXL9 164 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 OR4C3Q8NH37 302 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 SIPA1Q96FS4 1042 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ADAD1Q96M93 576 aaKnown RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 ELF4Q99607 663 aaPredicted RBP11.13□□□□□ -0.63
CLIP3-201ENST00000360535 GINS4Q9BRT9 223 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 NOX3Q9HBY0 568 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 TCF7L1Q9HCS4 588 aa11.13□□□□□ -0.63
CLIP3-201ENST00000360535 FANCMQ8IYD8 2048 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 RP1P56715 2156 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 TSPAN4O14817 238 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 DOK2O60496 412 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 SC5DO75845 299 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 CBX7O95931 251 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 IFNA7P01567 189 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 CELA2BP08218 269 aaPredicted RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 OR2T7P0C7T2 308 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 FCARP24071 287 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 KLF9Q13886 244 aaPredicted RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF613Q6PF04 617 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 NHLRC1Q6VVB1 395 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF782Q6ZMW2 699 aaPredicted RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 OR2T27Q8NH04 317 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 KCNK15Q9H427 330 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 HEXA-AS1Q9H8Q6 139 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 CA10Q9NS85 328 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PRR32B1ATL7 298 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 ZNF879B4DU55 563 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 OR7A10O76100 309 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 KLF8O95600 359 aaPredicted RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 ATP1B1P05026 303 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PSMB1P20618 241 aaKnown RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 ACAA2P42765 397 aaKnown RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PSMA6P60900 246 aaKnown RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PSG6Q00889 435 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 LGALS3BPQ08380 585 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PLA2G7Q13093 441 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 SLC22A10Q63ZE4 541 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 RCBTB1Q8NDN9 531 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 OR11G2Q8NGC1 345 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 OR8S1Q8NH09 359 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 SMIM4Q8WVI0 70 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 FCAMRQ8WWV6 532 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 JAM3Q9BX67 310 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 DNAJB12Q9NXW2 375 aaKnown RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 MYEF2Q9P2K5 600 aaKnown RBP11.12□□□□□ -0.63
CLIP3-201ENST00000360535 KLF15Q9UIH9 416 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 PILRAQ9UKJ1 303 aa11.12□□□□□ -0.63
CLIP3-201ENST00000360535 KRT33AO76009 404 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SPI1P17947 270 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 BTG2P78543 158 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ENPP2Q13822 863 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 LINC00303Q3SY05 128 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SLITRK4Q8IW52 837 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 COQ8AQ8NI60 647 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 RIT1Q92963 219 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 WDR92Q96MX6 357 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 CRISPLD2Q9H0B8 497 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 FAM60AQ9NP50 221 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 MEIKINA0A087WXM9 373 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 H0YC42 278 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 CYR61O00622 381 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SULT1A3P0DMM9 295 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SULT1A4P0DMN0 295 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 GAAP10253 952 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 HPGDP15428 266 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 CDK2P24941 298 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ACTA2P62736 377 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 ACTG2P63267 376 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 PUDPQ08623 228 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 UBE2NLQ5JXB2 153 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 SFRP5Q5T4F7 317 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 C1orf53Q5VUE5 145 aa11.11□□□□□ -0.63
CLIP3-201ENST00000360535 RPL22L1Q6P5R6 122 aaKnown RBP11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms