RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 IDH3BO43837 385 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ICAM2P13598 275 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 TCEA1P23193 301 aaKnown RBP12.12□□□□□ -0.47
HMGB1-202ENST00000339872 MLF1P58340 268 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 Q0VFX4 171 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ATCAYQ86WG3 371 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 LSM14AQ8ND56 463 aaKnown RBP12.12□□□□□ -0.47
HMGB1-202ENST00000339872 STK35Q8TDR2 534 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ZFAND2BQ8WV99 257 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 TBX5Q99593 518 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 CHCHD6Q9BRQ6 235 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 ERVK13-1Q9NX77 482 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 P4HTMQ9NXG6 502 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 SLC6A5Q9Y345 797 aa12.12□□□□□ -0.47
HMGB1-202ENST00000339872 SPAARA0A1B0GVQ0 90 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 C12orf71A8MTZ7 269 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 J3QRE1 110 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 TSPAN19P0C672 248 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 FTH1P19P0C7X4 201 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 CDK4P11802 303 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 APOBEC1P41238 236 aaKnown RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 RPS3AP61247 264 aaKnown RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 TMED1Q13445 227 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 IL10RAQ13651 578 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 C5orf46Q6UWT4 87 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 FAM122BQ7Z309 247 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 JAZF1Q86VZ6 243 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 TMEM99Q8N816 258 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 NPEPL1Q8NDH3 523 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 OR2M3Q8NG83 312 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 OR51L1Q8NGJ5 315 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 ZPLD1Q8TCW7 415 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 ZHX1-C8orf76Q96EF9 292 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 FBXL2Q9UKC9 423 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 SPIN1Q9Y657 262 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 C21orf140B9A014 251 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 C11orf98E9PRG8 122 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 IMPA2O14732 288 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 FOXD2O60548 495 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 RAD1O60671 282 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 CCL3P10147 92 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 GRPRP30550 384 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 SDHAP31040 664 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 SNTA1Q13424 505 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 PLPPR5Q32ZL2 321 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 TIMM50Q3ZCQ8 353 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 SOWAHCQ53LP3 525 aaPredicted RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 LIPKQ5VXJ0 399 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 LEG1Q6P5S2 330 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 C19orf48Q6RUI8 117 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 KLHL36Q8N4N3 616 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 ACBD7Q8N6N7 88 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 ATP6V1C2Q8NEY4 427 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 OR10H4Q8NGA5 316 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 OR4K17Q8NGC6 315 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 OR5J2Q8NH18 312 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 JAM3Q9BX67 310 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 GPR87Q9BY21 358 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 ADGRL4Q9HBW9 690 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 CPNE5Q9HCH3 593 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 TIMMDC1Q9NPL8 285 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 HPF1Q9NWY4 346 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 GRHPRQ9UBQ7 328 aa12.11□□□□□ -0.47
HMGB1-202ENST00000339872 MRPS18BQ9Y676 258 aaKnown RBP12.11□□□□□ -0.47
HMGB1-202ENST00000339872 PNMA8CA0A1B0GUJ8 204 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 OR6C68A6NDL8 312 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 APEHP13798 732 aaKnown RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ROR2Q01974 943 aaKnown RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 SGCBQ16585 318 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 SLC6A19Q695T7 634 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 MARCH9Q86YJ5 346 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 WDSUB1Q8N9V3 476 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 TM9SF4Q92544 642 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ZMYND19Q96E35 227 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 MRGPRX4Q96LA9 322 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 TSPAN32Q96QS1 320 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ZNF649Q9BS31 505 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 CENPOQ9BU64 300 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ASPNQ9BXN1 380 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 RNF167Q9H6Y7 350 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ASB6Q9NWX5 421 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 NDUFB11Q9NX14 153 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 TAS2R5Q9NYW4 299 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 LOC101059948A0A1B0GTJ6 334 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 DAPL1A0PJW8 107 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 FAM47E-STBD1D6RA91 191 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 STMND1H3BQB6 276 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 OR2T1O43869 369 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 SBK2P0C263 348 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 AHCYP23526 432 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 CDKN2AP42771 156 aaKnown RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 DLX5P56178 289 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 LGALS3BPQ08380 585 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 CHAF1BQ13112 559 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 KRR1Q13601 381 aaKnown RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 LCN1P1Q5VSP4 162 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 B3GNTL1Q67FW5 361 aaPredicted RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 PHC2Q8IXK0 858 aa12.1□□□□□ -0.47
HMGB1-202ENST00000339872 DND1Q8IYX4 353 aaKnown RBP12.1□□□□□ -0.47
HMGB1-202ENST00000339872 ARMC10Q8N2F6 343 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms