RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 EMC9Q9Y3B6 208 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 IGHV3-20A0A0C4DH32 117 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TRBV4-1A0A0J9YWV2 114 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 MCRIP1C9JLW8 97 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 MSTNO14793 375 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 DNAJB5O75953 348 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 SEC14L2O76054 403 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 EBPQ15125 230 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 FAM111BQ6SJ93 734 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 OPN5Q6U736 354 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TMEM163Q8TC26 289 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 INTS12Q96CB8 462 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 NGBQ9NPG2 151 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 DNMT3BQ9UBC3 853 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 FBXO7Q9Y3I1 522 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 NXPH2O95156 264 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RD3LP0DJH9 198 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 C7P10643 843 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 TCN2P20062 427 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RGRP47804 291 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 CARD18P57730 90 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 RFLNAQ6ZTI6 216 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 SUMF1Q8NBK3 374 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 KATNB1Q9BVA0 655 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 NIT2Q9NQR4 276 aa11.74□□□□□ -0.53
SDC3-201ENST00000336798 DCAF13Q9NV06 445 aaKnown RBP11.74□□□□□ -0.53
SDC3-201ENST00000336798 P2RY10O00398 339 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 ADAM12O43184 909 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 PMP2P02689 132 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SNRPBP14678 240 aaKnown RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 HSD17B7P56937 341 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 MEF2DQ14814 521 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 PEA15Q15121 130 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 DUSP7Q16829 419 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 PGGHGQ32M88 737 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 B3GNT8Q7Z7M8 397 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 GIMAP1Q8WWP7 306 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 LRFN5Q96NI6 719 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CDCA3Q99618 268 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 IFT22Q9H7X7 185 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 PGAP2Q9UHJ9 254 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 MYH10P35580 1976 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 TMEM72A0PK05 275 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CNIH1O95406 144 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 MYOGP15173 224 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 C21orf33P30042 268 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 SELPLGQ14242 412 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 RFPL4BQ6ZWI9 263 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SLC39A11Q8N1S5 342 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 OR51D1Q8NGF3 324 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 USP22Q9UPT9 525 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 TRAV20A0A0B4J274 112 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 FADS1O60427 444 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 EDN1P05305 212 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 MSMO1Q15800 293 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 TANGO2Q6ICL3 276 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CPEB2Q7Z5Q1 589 aaKnown RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 PIGTQ969N2 578 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CPNE4Q96A23 557 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 NKX3-1Q99801 234 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 MFRPQ9BY79 579 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 PCDHGA5Q9Y5G8 931 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 FAM166BA8MTA8 275 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 BHLHE40O14503 412 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 ZNF264O43296 627 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 IL1AP01583 271 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SLC5A2P31639 672 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 GSK3AP49840 483 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 KCNJ10P78508 379 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 UBE2NLQ5JXB2 153 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SYT13Q7L8C5 426 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 TFAP2CQ92754 450 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SLC41A2Q96JW4 573 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 ZNF75AQ96N20 296 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CNTNAP3Q9BZ76 1288 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CRYM-AS1A6NIL9 109 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 FOXE1O00358 373 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 GAPDHSO14556 408 aaPredicted RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 GPX3P22352 226 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 TPMTP51580 245 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 HBA1P69905 142 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CLINT1Q14677 625 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SMN1Q16637 294 aaKnown RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 SLC6A19Q695T7 634 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 LYPD4Q6UWN0 246 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 OLIG3Q7RTU3 272 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CLSTN3Q9BQT9 956 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 SMCO4Q9NRQ5 59 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 MRPL22Q9NWU5 206 aaKnown RBP11.73□□□□□ -0.53
SDC3-201ENST00000336798 FBXL2Q9UKC9 423 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 CCL26Q9Y258 94 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 UGT2A1Q9Y4X1 527 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 WIF1Q9Y5W5 379 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 HCFC2Q9Y5Z7 792 aa11.73□□□□□ -0.53
SDC3-201ENST00000336798 GABRPO00591 440 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 HS3ST1O14792 307 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 TXNDC12O95881 172 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 HLA-FP30511 346 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 GJA4P35212 333 aa11.72□□□□□ -0.53
SDC3-201ENST00000336798 OR1D5P58170 312 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms