RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 RNF167Q9H6Y7 350 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 ASIC5Q9NY37 505 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 PLEK2Q9NYT0 353 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 AIFM1O95831 613 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 SFTPDP35247 375 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 VASPP50552 380 aaPredicted RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 RPS18P62269 152 aaKnown RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 PAN3Q58A45 887 aaKnown RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 MARCH8Q5T0T0 291 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM184AQ6ZMB5 413 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 CCDC71Q8IV32 467 aaPredicted RBP16.13■□□□□ 0.17
SYNPO-201ENST00000307662 LKAAEAR1Q8TD35 194 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM106AQ96A25 262 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 SLCO4A1Q96BD0 722 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 LHX3Q9UBR4 397 aa16.13■□□□□ 0.17
SYNPO-201ENST00000307662 C4BP0C0L5 1744 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 GIPP09681 153 aaPredicted RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 MRPL21Q7Z2W9 205 aaKnown RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 STEAP1Q9UHE8 339 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PCYT1BQ9Y5K3 369 aaPredicted RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 NPFFR2Q9Y5X5 522 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PRSS44E7EML9 344 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 TGM5O43548 720 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PSMB5P28074 263 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 HEPHL1Q6MZM0 1159 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PLPP5Q8NEB5 264 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 OR52H1Q8NGJ2 320 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 RSPRY1Q96DX4 576 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 RADILQ96JH8 1075 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 DDOQ99489 341 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PAPOLGQ9BWT3 736 aaKnown RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 GABARAPL1Q9H0R8 117 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 LIN7BQ9HAP6 207 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF286AQ9HBT8 521 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 VDAC3Q9Y277 283 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 AGAP14A8MT82 685 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 KDM4EB2RXH2 506 aaPredicted RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 TIMP2P16035 220 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 FPR3P25089 353 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 FOXK2Q01167 660 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 SHDQ96IW2 340 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 NDRG4Q9ULP0 352 aaKnown RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 ADAM12O43184 909 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 P04436 131 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 F13BP05160 661 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 XKR7Q5GH72 579 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 ZMAT1Q5H9K5 638 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 FBXW12Q6X9E4 464 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 PLXDC1Q8IUK5 500 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 OR10R2Q8NGX6 335 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 NEURL3Q96EH8 262 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 SLC41A2Q96JW4 573 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 TNFRSF13CQ96RJ3 184 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 GPR174Q9BXC1 333 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 CXorf36Q9H7Y0 433 aa16.12■□□□□ 0.17
SYNPO-201ENST00000307662 SIDT1Q9NXL6 827 aaKnown RBP16.12■□□□□ 0.17
SYNPO-201ENST00000307662 A0A0A6YYC8 382 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 ARGFXA6NJG6 315 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 I3L1I5 382 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 PGBD5Q8N414 524 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 YIPF5Q969M3 257 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 CMSS1Q9BQ75 279 aaKnown RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 SLC25A21Q9BQT8 299 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 KATNB1Q9BVA0 655 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 NIT2Q9NQR4 276 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM129A0AVI4 362 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM189-UBE2V1I3L0A0 370 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 SYT5O00445 386 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 RAF1P04049 648 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 C1SP09871 688 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF761Q86XN6 746 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 CPXM2Q8N436 756 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 RAB3CQ96E17 227 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 GNG13Q9P2W3 67 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 PPP1R2P9O14990 202 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 ADRB1P08588 477 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 NANOS1Q8WY41 292 aaKnown RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 NECTIN4Q96NY8 510 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 TMEM43Q9BTV4 400 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 OR52A5Q9H2C5 316 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 MYH4Q9Y623 1939 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 A0A1B0GTW7 788 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 ZNF593O00488 134 aaPredicted RBP16.11■□□□□ 0.17
SYNPO-201ENST00000307662 NTSR1P30989 418 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 CSNK1A1P48729 337 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 RUNX3Q13761 415 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 H3F3CQ6NXT2 135 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 SGK3Q96BR1 496 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 ANKRD19PQ9H560 264 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 SAGE1Q9NXZ1 904 aa16.11■□□□□ 0.17
SYNPO-201ENST00000307662 CCDC163A0A0D9SF12 145 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 GPR75O95800 540 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 LPCAT3Q6P1A2 487 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 RBMS3Q6XE24 437 aaKnown RBP16.1■□□□□ 0.17
SYNPO-201ENST00000307662 CMIPQ8IY22 773 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 TCEAL8Q8IYN2 117 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 AKIP1Q9NQ31 210 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 UBQLN4Q9NRR5 601 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 RNF186Q9NXI6 227 aa16.1■□□□□ 0.17
SYNPO-201ENST00000307662 PURGQ9UJV8 347 aaKnown RBP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 115.4 ms