RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 RNLSQ5VYX0 342 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 TUBA3EQ6PEY2 450 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 GID4Q8IVV7 300 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 OR5J2Q8NH18 312 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 SLC25A43Q8WUT9 341 aaPredicted RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 FAR1Q8WVX9 515 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 GNRHR2Q96P88 292 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 TAPBPLQ9BX59 468 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 SLC24A3Q9HC58 644 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ACOT13Q9NPJ3 140 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 MRPL39Q9NYK5 338 aaKnown RBP12.74□□□□□ -0.37
SS18-201ENST00000269137 CORINQ9Y5Q5 1042 aa12.74□□□□□ -0.37
SS18-201ENST00000269137 ARGFXA6NJG6 315 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 SHISA8B8ZZ34 492 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 G3V3Y1 287 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 ZIC3O60481 467 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 SEC14L2O76054 403 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 TXNDC12O95881 172 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 GRPRP30550 384 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 HTR1FP30939 366 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 MTNR1AP48039 350 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 CDH11P55287 796 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 RAB40BQ12829 278 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 SELENBP1Q13228 472 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 ITGADQ13349 1161 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 RAB39AQ14964 217 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 TBCEQ15813 527 aaPredicted RBP12.73□□□□□ -0.37
SS18-201ENST00000269137 SLC6A19Q695T7 634 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 C3orf33Q6P1S2 294 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 PLBD1Q6P4A8 553 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 FAM122BQ7Z309 247 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 IGFN1Q86VF2 1251 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 C9orf43Q8TAL5 461 aaPredicted RBP12.73□□□□□ -0.37
SS18-201ENST00000269137 FCGR1BQ92637 280 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 PTP4A1Q93096 173 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 SLC25A36Q96CQ1 311 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 TMEM80Q96HE8 168 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 KATNB1Q9BVA0 655 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 TAS2R5Q9NYW4 299 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 H2AFY2Q9P0M6 372 aaPredicted RBP12.73□□□□□ -0.37
SS18-201ENST00000269137 ADAM18Q9Y3Q7 739 aa12.73□□□□□ -0.37
SS18-201ENST00000269137 A0A0G2JMM0 328 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 A0A1W2PPB8 328 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 A0A1W2PRS3 328 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 KIR3DP1A8MWS1 328 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 PRR23D1E9PI22 279 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 FADS2O95864 444 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 WDPCPO95876 746 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 PRR23D2P0DMB1 279 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 HIST1H1CP16403 213 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 WT1P19544 449 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 IL11P20809 199 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 IDUAP35475 653 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 MAP2K4P45985 399 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 DNASE1L1P49184 302 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ERVK-25P63136 954 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 SRSF6Q13247 344 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 TMED1Q13445 227 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 EMC4Q5J8M3 183 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 SYT6Q5T7P8 510 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 AGAP7PQ5VUJ5 663 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 NIPAL3Q6P499 406 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 SCAIQ8N9R8 606 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 OR13F1Q8NGS4 319 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 RORBQ92753 470 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 LGALS12Q96DT0 336 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ARL5BQ96KC2 179 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 AGAP4Q96P64 663 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 DDOQ99489 341 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ASPNQ9BXN1 380 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 FGF20Q9NP95 211 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 MRPS18CQ9Y3D5 142 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 CEPT1Q9Y6K0 416 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 LRRC3CA6NJW4 275 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 LIPT2A6NK58 231 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 FAM183AA6NL82 134 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ZNF891A8MT65 544 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 ZNF99A8MXY4 864 aaPredicted RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 PLPP3O14495 311 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 INMTO95050 263 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ZNF17P17021 662 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 PAICSP22234 425 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 ACVR2AP27037 513 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 DCKP27707 260 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 SRD5A2P31213 254 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 CTXN1P60606 82 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 FOXK1P85037 733 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 ROR2Q01974 943 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 CRMP1Q14194 572 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 OR1C1Q15619 314 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 UBE2UQ5VVX9 321 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 GPR139Q6DWJ6 353 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 SPINK14Q6IE38 97 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 MEPCEQ7L2J0 689 aaKnown RBP12.72□□□□□ -0.37
SS18-201ENST00000269137 SLC37A3Q8NCC5 494 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 BBS1Q8NFJ9 593 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 OR52E2Q8NGJ4 325 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 OR52I1Q8NGK6 324 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 OR4K13Q8NH42 304 aa12.72□□□□□ -0.37
SS18-201ENST00000269137 NMD3Q96D46 503 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms