RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 OR51A7Q8NH64 312 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 SLC12A9Q9BXP2 914 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 ADAMTS5Q9UNA0 930 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 PLXNA1Q9UIW2 1896 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 M0QYG6 137 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 NFATC1O95644 943 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 IL5P05113 134 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 C8GP07360 202 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 TMIGD3P0DMS9 266 aaPredicted RBP13.53□□□□□ -0.24
PTPRA-201ENST00000216877 MNDAP41218 407 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 GAMTQ14353 236 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 AADACL4Q5VUY2 407 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 ZNF585AQ6P3V2 769 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 BAIAP2L2Q6UXY1 529 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 COMTD1Q86VU5 262 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 HCAR1Q9BXC0 346 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 MAGEH1Q9H213 219 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 BARX1Q9HBU1 254 aaPredicted RBP13.53□□□□□ -0.24
PTPRA-201ENST00000216877 CRLF2Q9HC73 371 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 GAR1Q9NY12 217 aaKnown RBP13.53□□□□□ -0.24
PTPRA-201ENST00000216877 METTL1Q9UBP6 276 aaKnown RBP13.53□□□□□ -0.24
PTPRA-201ENST00000216877 ZNF337Q9Y3M9 751 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 DENND4AQ7Z401 1863 aa13.53□□□□□ -0.24
PTPRA-201ENST00000216877 A0A1W2PRQ8 180 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 KDM4EB2RXH2 506 aaPredicted RBP13.52□□□□□ -0.24
PTPRA-201ENST00000216877 SLC34A2O95436 690 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 MAS1P04201 325 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 PGAM2P15259 253 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 GLP1RP43220 463 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 CDC42EP1Q00587 391 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 C1orf94Q6P1W5 598 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 ZNF740Q8NDX6 193 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 RNF141Q8WVD5 230 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 ZMYND19Q96E35 227 aaPredicted RBP13.52□□□□□ -0.24
PTPRA-201ENST00000216877 DPH1Q9BZG8 443 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 MBD1Q9UIS9 605 aaPredicted RBP13.52□□□□□ -0.24
PTPRA-201ENST00000216877 MMP24Q9Y5R2 645 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 URGCP-MRPS24S4R325 110 aa13.52□□□□□ -0.24
PTPRA-201ENST00000216877 C17orf113A0A1B0GUU1 675 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 IMPA2O14732 288 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 OR10H2O60403 315 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SLC16A8O95907 504 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 CDNFQ49AH0 187 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 JMJD6Q6NYC1 403 aaPredicted RBP13.52□□□□□ -0.25
PTPRA-201ENST00000216877 PPP1R3BQ86XI6 285 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 OR7G2Q8NG99 324 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 LCORQ96JN0 433 aaPredicted RBP13.52□□□□□ -0.25
PTPRA-201ENST00000216877 CAPNS2Q96L46 248 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 F2RL3Q96RI0 385 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 C16orf70Q9BSU1 422 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 FBXL4Q9UKA2 621 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 CA14Q9ULX7 337 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 GTF2A1LQ9UNN4 478 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 ATG4BQ9Y4P1 393 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 DBX1A6NMT0 343 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SURF4O15260 269 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 MBTPS2O43462 519 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 NDUFV2P19404 249 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SPAM1P38567 509 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SPCS3P61009 180 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 RPS15P62841 145 aaKnown RBP13.52□□□□□ -0.25
PTPRA-201ENST00000216877 GGTA1PQ4G0N0 100 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 ZNF529Q6P280 563 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 ENPP7Q6UWV6 458 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 ARRDC1Q8N5I2 433 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 ZNF485Q8NCK3 441 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SETD7Q8WTS6 366 aaKnown RBP13.52□□□□□ -0.25
PTPRA-201ENST00000216877 SOCS4Q8WXH5 440 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 DEFB118Q96PH6 123 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 NRIP2Q9BQI9 281 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 OPA3Q9H6K4 179 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 P2RX2Q9UBL9 471 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 DNAJB11Q9UBS4 358 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 PADI3Q9ULW8 664 aa13.52□□□□□ -0.25
PTPRA-201ENST00000216877 CPED1A4D0V7 1026 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 MYADML2A6NDP7 307 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 RNASEK-C17orf49H0YIS7 233 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 ZNF208O43345 1280 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 MED6O75586 246 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 IFNA17P01571 189 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 MT-ND4LP03901 98 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 TPT1P13693 172 aaKnown RBP13.51□□□□□ -0.25
PTPRA-201ENST00000216877 HPGDP15428 266 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 UPP1Q16831 310 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 ZNF674Q2M3X9 581 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 POMGNT2Q8NAT1 580 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 CCDC107Q8WV48 283 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 MARS2Q96GW9 593 aaKnown RBP13.51□□□□□ -0.25
PTPRA-201ENST00000216877 NECAB3Q96P71 396 aaPredicted RBP13.51□□□□□ -0.25
PTPRA-201ENST00000216877 IP6K3Q96PC2 410 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 SPOCK3Q9BQ16 436 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 SEC11CQ9BY50 192 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 ZMAT3Q9HA38 289 aaKnown RBP13.51□□□□□ -0.25
PTPRA-201ENST00000216877 SH2B3Q9UQQ2 575 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 DYRK1BQ9Y463 629 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 TMEM272A0A1B0GTI8 110 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 FAM86C2PA6NEL3 165 aa13.51□□□□□ -0.25
PTPRA-201ENST00000216877 HLA-AP01891 365 aaKnown RBP13.51□□□□□ -0.25
PTPRA-201ENST00000216877 CD3DP04234 171 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms