RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 CLK1P49759 484 aaKnown RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 FOXA1P55317 472 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 MRPS11P82912 194 aaKnown RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 OTUD3Q5T2D3 398 aaPredicted RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 BRICD5Q6PL45 260 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 Q6ZPA2 131 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 SPATC1Q76KD6 591 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 OLIG3Q7RTU3 272 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 GSPT2Q8IYD1 628 aaKnown RBP12.42□□□□□ -0.42
CLN3-249ENST00000636685 ZNF563Q8TA94 476 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 ADAMTS15Q8TE58 950 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 ACTRT3Q9BYD9 372 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 GRHL1Q9NZI5 618 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 NUP50Q9UKX7 468 aa12.42□□□□□ -0.42
CLN3-249ENST00000636685 CCDC151A5D8V7 595 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 NPIPB8E9PQR5 432 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 CLDN34H7C241 214 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 TIMM23O14925 209 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 ANKRD28O15084 1053 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 PIN1P1O15428 100 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 BCAS1O75363 584 aaPredicted RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 UPK3AO75631 287 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 CSTAP01040 98 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 NR4A1P22736 598 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 RYKP34925 604 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 SELENOPP49908 381 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 LCN2P80188 198 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 GPR68Q15743 365 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 KLF17Q5JT82 389 aaPredicted RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 SAXO2Q658L1 398 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 ZNF771Q7L3S4 317 aaPredicted RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 GRINAQ7Z429 371 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 TMEM99Q8N816 258 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 ZNF764Q96H86 408 aaPredicted RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 ZNF317Q96PQ6 595 aaPredicted RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 SERHL2Q9H4I8 314 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 REEP4Q9H6H4 257 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 MOV10Q9HCE1 1003 aaKnown RBP12.41□□□□□ -0.42
CLN3-249ENST00000636685 PLEK2Q9NYT0 353 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 FZR1Q9UM11 496 aa12.41□□□□□ -0.42
CLN3-249ENST00000636685 URI1O94763 535 aaPredicted RBP12.4□□□□□ -0.42
CLN3-249ENST00000636685 PRB2P02812 416 aaPredicted RBP12.4□□□□□ -0.42
CLN3-249ENST00000636685 VSIG8P0DPA2 414 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 BCKDHAP12694 445 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 MAGEB1P43366 347 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 PKNOX1P55347 436 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 KRTAP10-3P60369 221 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 ARMCX4Q5H9R4 360 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 ASPHD2Q6ICH7 369 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 PAQR6Q6TCH4 344 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 GPAT4Q86UL3 456 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 MDP1Q86V88 176 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 WDFY1Q8IWB7 410 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 CLHC1Q8NHS4 586 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 RAB8BQ92930 207 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 SDF2Q99470 211 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 NMUR2Q9GZQ4 415 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 GPATCH2Q9NW75 528 aa12.4□□□□□ -0.42
CLN3-249ENST00000636685 FAF1Q9UNN5 650 aaPredicted RBP12.4□□□□□ -0.42
CLN3-249ENST00000636685 BIRC6Q9NR09 4857 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 TMEM72A0PK05 275 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ZC3H12DA2A288 527 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 TMEM229AB2RXF0 380 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 SCAMP2O15127 329 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 TBX19O60806 448 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 SEC22BO75396 215 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 AKR7A3O95154 331 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 HOXB1P14653 301 aaPredicted RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 FKBP2P26885 142 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 ARR3P36575 388 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ARF1P84077 181 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 LCP2Q13094 533 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 TP53BP2Q13625 1128 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 KIAA0040Q15053 153 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ZNF141Q15928 474 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ALKBH6Q3KRA9 238 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 C16orf87Q6PH81 154 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 EIF3MQ7L2H7 374 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 TREML1Q86YW5 311 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 CREG2Q8IUH2 290 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 OR5D16Q8NGK9 328 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 KIF18AQ8NI77 898 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 C16orf45Q96MC5 204 aaPredicted RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 TSSK3Q96PN8 268 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ERP44Q9BS26 406 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 ZNF385DQ9H6B1 395 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 TESQ9UGI8 421 aaKnown RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 WIPI2Q9Y4P8 454 aa12.39□□□□□ -0.43
CLN3-249ENST00000636685 SOX21Q9Y651 276 aaPredicted RBP12.39□□□□□ -0.43
CLN3-249ENST00000636685 TMED7-TICAM2A0A0A6YYA0 188 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 FCMRO60667 390 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 UGT2B17O75795 530 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 RSL1D1O76021 490 aaKnown RBP12.38□□□□□ -0.43
CLN3-249ENST00000636685 TSPAN15O95858 294 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 GPANK1O95872 356 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 TCP1P17987 556 aaKnown RBP12.38□□□□□ -0.43
CLN3-249ENST00000636685 IMPDH1P20839 514 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 PGM1P36871 562 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 RAD52P43351 418 aa12.38□□□□□ -0.43
CLN3-249ENST00000636685 CCT3P49368 545 aaKnown RBP12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms