RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 RANBP3Q9H6Z4 567 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 PLEKHA1Q9HB21 404 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ZFP64Q9NPA5 681 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 GNG8Q9UK08 70 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ING4Q9UNL4 249 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 LRP4O75096 1905 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 TICRRQ7Z2Z1 1910 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ARHGEF17Q96PE2 2063 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 OR6C68A6NDL8 312 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF879B4DU55 563 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 PRAMEF2O60811 474 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 CELA2BP08218 269 aaPredicted RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 GIFP27352 417 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 EIF2B5Q13144 721 aaKnown RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 HTR4Q13639 388 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF684Q5T5D7 378 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 MCATQ8IVS2 390 aaKnown RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 C3orf49Q96BT1 292 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 NMNAT3Q96T66 252 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 ANKRD10Q9NXR5 420 aa11.69□□□□□ -0.54
LINC00540-203ENST00000631321 AK6Q9Y3D8 172 aaKnown RBP11.69□□□□□ -0.54
LINC00540-203ENST00000631321 TRABD2BA6NFA1 517 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 GNB5O14775 395 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PIN1P1O15428 100 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 SELENOFO60613 162 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 CSTAP01040 98 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 RPL4P36578 427 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PRPS1P60891 318 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 FUT7Q11130 342 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 STX4Q12846 297 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 GSG1Q2KHT4 349 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 DEFB110Q30KQ9 67 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 LINC01590Q5TEZ4 76 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF440Q8IYI8 595 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 BCORP1Q8N888 145 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 C19orf47Q8N9M1 422 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 LGALS14Q8TCE9 139 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ADAMTS18Q8TE60 1221 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 HGDQ93099 445 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 RNF166Q96A37 237 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 MRPL38Q96DV4 380 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 HSPA12BQ96MM6 686 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF578Q96N58 590 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ZFP3Q96NJ6 502 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 GFI1Q99684 422 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PDCD1LG2Q9BQ51 273 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 RBCK1Q9BYM8 510 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ACTR6Q9GZN1 396 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 CCDC86Q9H6F5 360 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 NOX4Q9NPH5 578 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 C2orf42Q9NWW7 574 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 LRIT1Q9P2V4 623 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 MRPS33Q9Y291 106 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 FANCMQ8IYD8 2048 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 IGKV1D-42A0A075B6H8 117 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 A0A0A6YYC8 382 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PRAMEF26H0Y7S4 382 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 I3L1I5 382 aaPredicted RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PDCD5O14737 125 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 GLCEO94923 617 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 SEMA4FO95754 770 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ANKRD34CP0C6C1 535 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ANXA3P12429 323 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 SRMP19623 302 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 SLC25A1P53007 311 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 NDUFAF6Q330K2 333 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 CMTM4Q8IZR5 234 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 FAM71CQ8NEG0 241 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 OR4C3Q8NH37 302 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ZPLD1Q8TCW7 415 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 LIPHQ8WWY8 451 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 PHF21AQ96BD5 680 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 EMC3Q9P0I2 261 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 CLEC1BQ9P126 229 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 HCN3Q9P1Z3 774 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 CLEC4AQ9UMR7 237 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 MRPS7Q9Y2R9 242 aaKnown RBP11.68□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF281Q9Y2X9 895 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 SCN2AQ99250 2005 aa11.68□□□□□ -0.54
LINC00540-203ENST00000631321 AIPO00170 330 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 IGHV4-34P06331 123 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 H2AFB2P0C5Z0 115 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 APEHP13798 732 aaKnown RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 GABRG2P18507 467 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 SKP1P63208 163 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 IKZF1Q13422 519 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF267Q14586 743 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 KLHL26Q53HC5 615 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ARMC6Q6NXE6 501 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 FAM199XQ6PEV8 388 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 LYPD8Q6UX82 237 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ESPNLQ6ZVH7 1005 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 FGD2Q7Z6J4 655 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF761Q86XN6 746 aaPredicted RBP11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF527Q8NB42 609 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 C16orf52Q8NHV5 167 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 ZNF671Q8TAW3 534 aa11.67□□□□□ -0.54
LINC00540-203ENST00000631321 OIT3Q8WWZ8 545 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms