RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 FNDC9Q8TBE3 224 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 VNN3Q9NY84 501 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 MEMO1Q9Y316 297 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 LYVE1Q9Y5Y7 322 aa17.64■□□□□ 0.41
UPF3A-211ENST00000618700 SLC22A20A6NK97 555 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 ENO4A6NNW6 628 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 KPNA4O00629 521 aaPredicted RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 SMAD9O15198 467 aaKnown RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 OR2T1O43869 369 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 PIP5K1CO60331 668 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 GADD45GO95257 159 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 TGM6O95932 706 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 BGLAPP02818 100 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 KLK2P20151 261 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 AGFG1P52594 562 aaKnown RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 OR2B6P58173 313 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 SLC35A1P78382 337 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 H3F3AP84243 136 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 FOXD4Q12950 439 aaPredicted RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 OR7A5Q15622 319 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 PODNL1Q6PEZ8 512 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 RNF128Q8TEB7 428 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 TTYH2Q9BSA4 534 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 YY1AP1Q9H869 796 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 MCTS1Q9ULC4 181 aaKnown RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 MED31Q9Y3C7 131 aa17.63■□□□□ 0.41
UPF3A-211ENST00000618700 HELZ2Q9BYK8 2649 aaKnown RBP17.63■□□□□ 0.41
UPF3A-211ENST00000618700 KRT36O76013 467 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 AQP8O94778 261 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 SYNGR4O95473 234 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 CST1P01037 141 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 GLI4P10075 376 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 FPR1P21462 350 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ENPP1P22413 925 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 HMGA2P52926 109 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 CTBP2P56545 445 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 LTBQ06643 244 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 SEC23BQ15437 767 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF74Q16587 644 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 C4orf17Q53FE4 359 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ABLIM2Q6H8Q1 611 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 PAQR6Q6TCH4 344 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF730Q6ZMV8 503 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 MBOAT2Q6ZWT7 520 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 SLC46A3Q7Z3Q1 461 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 RNF113BQ8IZP6 322 aaKnown RBP17.62■□□□□ 0.41
UPF3A-211ENST00000618700 C9orf106Q8NAJ2 232 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 OR4C15Q8NGM1 316 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 OR52J3Q8NH60 311 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ZHX1-C8orf76Q96EF9 292 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 MOGAT1Q96PD6 335 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 TAPBPLQ9BX59 468 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 KLHL4Q9C0H6 718 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 C20orf141Q9NUB4 165 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 AP4S1Q9Y587 144 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 ARHGAP21Q5T5U3 1957 aa17.62■□□□□ 0.41
UPF3A-211ENST00000618700 PHF3Q92576 2039 aaKnown RBP17.62■□□□□ 0.41
UPF3A-211ENST00000618700 A0A1B0GUH1 482 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 SH3PXD2BA1X283 911 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 HTR3EA5X5Y0 456 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF814B7Z6K7 855 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 LRRN3E7EW58 273 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 CCL21O00585 134 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 EIF1BO60739 113 aaKnown RBP17.61■□□□□ 0.41
UPF3A-211ENST00000618700 MT-ATP6P00846 226 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 FCGR2AP12318 317 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 TIMP3P35625 211 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 P2RY4P51582 365 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 NUP107P57740 925 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 MFSD13AQ14CX5 517 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 TBPL2Q6SJ96 375 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 NCCRP1Q6ZVX7 275 aaPredicted RBP17.61■□□□□ 0.41
UPF3A-211ENST00000618700 FCRLAQ7L513 359 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 NRMQ8IXM6 262 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 ROBO4Q8WZ75 1007 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 RNF122Q9H9V4 155 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 CORINQ9Y5Q5 1042 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 FLNCQ14315 2725 aa17.61■□□□□ 0.41
UPF3A-211ENST00000618700 IGHV3-15A0A0B4J1V0 119 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 TNFRSF11BO00300 401 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 ENTPD5O75356 428 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 TIPRLO75663 272 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 TOXO94900 526 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 CEACAM8P31997 349 aaPredicted RBP17.6■□□□□ 0.41
UPF3A-211ENST00000618700 PRKCDQ05655 676 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 GK3PQ14409 553 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 EXOC3L2Q2M3D2 409 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 RIPPLY2Q5TAB7 128 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 TMEM211Q6ICI0 200 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 ADPRHL1Q8NDY3 354 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 OR4K5Q8NGD3 323 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 PYDC1Q8WXC3 89 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 SLC25A36Q96CQ1 311 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 ALPK1Q96QP1 1244 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 TM9SF2Q99805 663 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 REEP1Q9H902 201 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 FKRPQ9H9S5 495 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 DNAJB9Q9UBS3 223 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 SEC14L4Q9UDX3 406 aa17.6■□□□□ 0.41
UPF3A-211ENST00000618700 ZNF229Q9UJW7 825 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms