RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 PRSS27Q9BQR3 290 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 EXOSC3Q9NQT5 275 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 POLE3Q9NRF9 147 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 TMEM181Q9P2C4 612 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FLVCR1Q9Y5Y0 555 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FN1P02751 2386 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 A0A096LPE4 126 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 A0A1W2PPZ6 126 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 FAM221AA4D161 298 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 C11orf98E9PRG8 122 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MSTNO14793 375 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 KLF4O43474 513 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 SYNGR4O95473 234 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 LGI1O95970 557 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 YES1P07947 543 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ITGA5P08648 1049 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 PNMTP11086 282 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 EPXP11678 715 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CXCR1P25024 350 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ELK4P28324 431 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 LCN1P31025 176 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 GCKP35557 465 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CD79BP40259 229 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 SUMO3P55854 103 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 LIPEQ05469 1076 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 RUNX1T1Q06455 604 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 LARS2Q15031 903 aaKnown RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 HIKESHIQ53FT3 197 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 ABLIM2Q6H8Q1 611 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 PIGWQ7Z7B1 504 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CPLX4Q7Z7G2 160 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 EPHX4Q8IUS5 362 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 C11orf65Q8NCR3 313 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 HIPK4Q8NE63 616 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 CPNE4Q96A23 557 aaPredicted RBP5.03□□□□□ -1.6
CPNE3-208ENST00000614678 MCHR1Q99705 422 aa5.03□□□□□ -1.6
CPNE3-208ENST00000614678 A0A0B4J2E0 115 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 A0A1B0GX12 115 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 IL18BPO95998 194 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 THBS1P07996 1170 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 PATE4P0C8F1 98 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 APOBEC1P41238 236 aaKnown RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 GSK3BP49841 420 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 NR1H2P55055 460 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 Q71RC1 249 aaPredicted RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 NET1Q7Z628 596 aaPredicted RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 UBE2J2Q8N2K1 259 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 BBS10Q8TAM1 723 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CCT8L2Q96SF2 557 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 IL20RAQ9UHF4 553 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ZNF175Q9Y473 711 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ANK3Q12955 4377 aaKnown RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 FAM47E-STBD1D6RA91 191 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 MS4A18H0YCH9 400 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 T-ENOLP0DO92 83 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ETS2P15036 469 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 PRKAR1BP31321 381 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 UGT2B15P54855 530 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 MS4A18Q3C1V0 323 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 FBXW10Q5XX13 1052 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 WBP2NLQ6ICG8 309 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ADAM5Q6NVV9 412 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 IGFN1Q86VF2 1251 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 EID3Q8N140 333 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 TMEM234Q8WY98 164 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 AMBRA1Q9C0C7 1298 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 RAD21L1Q9H4I0 556 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 FAM53CQ9NYF3 392 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 C16orf97H3BN30 126 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CELA3BP08861 270 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CD8BP10966 210 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 GRPRP30550 384 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 MELKQ14680 651 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 NRF1Q16656 503 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 EEF1A1P5Q5VTE0 462 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CASP12Q6UXS9 341 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 RINLQ6ZS11 566 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CARM1Q86X55 608 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 OR2T12Q8NG77 320 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 REXO5Q96IC2 774 aaKnown RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ARHGDIGQ99819 225 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 BCO1Q9HAY6 547 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ZNF232Q9UNY5 417 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 NOSIPQ9Y314 301 aaKnown RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 TESMINQ9Y4I5 508 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 GMEB1Q9Y692 573 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 NSD1Q96L73 2696 aaPredicted RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 DPRXA6NFQ7 191 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 LY6HO94772 140 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ZNF682O95780 498 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CH25HO95992 272 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 F13BP05160 661 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 ZNF26P17031 533 aaPredicted RBP5.02□□□□□ -1.61
CPNE3-208ENST00000614678 PCGF2P35227 344 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 LAPTM4AQ15012 233 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 CYBRD1Q53TN4 286 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 TMEM201Q5SNT2 666 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 PRAMEF8Q5VWM4 474 aa5.02□□□□□ -1.61
CPNE3-208ENST00000614678 PRAMEF7Q5VXH5 474 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms