RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DOK2O60496 412 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 ITPRIPL2Q3MIP1 535 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 EOGTQ5NDL2 527 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 POMGNT2Q8NAT1 580 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 RELL2Q8NC24 303 aaPredicted RBP11.63□□□□□ -0.55
LIG1-221ENST00000613670 CCDC107Q8WV48 283 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 PRSS16Q9NQE7 514 aa11.63□□□□□ -0.55
LIG1-221ENST00000613670 DISC1C4P0D8 188 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CLDN4O14493 209 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 RDH16O75452 317 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SC5DO75845 299 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 PAPLNO95428 1278 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CFDP00746 253 aaPredicted RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 AMY2AP04746 511 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SPARCP09486 303 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 OR2T7P0C7T2 308 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 GDI1P31150 447 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 FUT5Q11128 374 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 ERV3-1Q14264 604 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 GK2Q14410 553 aaPredicted RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 KLHL26Q53HC5 615 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 Q6ZTK2 550 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CCDC36Q8IYA8 594 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 RNF113BQ8IZP6 322 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 OR6V1Q8N148 313 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 MRPL43Q8N983 215 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 FAM181AQ8N9Y4 354 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 OR2T27Q8NH04 317 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SMARCD2Q92925 531 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 PTP4A1Q93096 173 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 PEX11GQ96HA9 241 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 TSNAXQ99598 290 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 CMKLR1Q99788 373 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 ERVMER34-1Q9H9K5 563 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 LHX9Q9NQ69 397 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 NCDNQ9UBB6 729 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 FBXO9Q9UK97 447 aaPredicted RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 NAP1L6A6NFF2 107 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 RNGTTO60942 597 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 ACSM4P0C7M7 580 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CCL5P13501 91 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 NID1P14543 1247 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 M6PRP20645 277 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 TNFRSF17Q02223 184 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 LTBQ06643 244 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 PUDPQ08623 228 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 C17orf107Q6ZR85 190 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 ZNF550Q7Z398 422 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 FOXRED2Q8IWF2 684 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 LNX2Q8N448 690 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 OR2T4Q8NH00 348 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SLC7A5P2Q9GIP4 190 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SLC6A20Q9NP91 592 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 ZNF281Q9Y2X9 895 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CEP290O15078 2479 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 DCDC2BA2VCK2 349 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 EIF1AYO14602 144 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 S100A11P31949 105 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 PRSS3P35030 304 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 MAP2K6P52564 334 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 RPS21P63220 83 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 CCDC157Q569K6 752 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SLC25A30Q5SVS4 291 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SFRP5Q5T4F7 317 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 GSG1LQ6UXU4 331 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SDR16C5Q8N3Y7 309 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 CSNK1A1LQ8N752 337 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 APOBEC4Q8WW27 367 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 HERVK_113Q902F9 699 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 TRIM43Q96BQ3 446 aaPredicted RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 SCMH1Q96GD3 660 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SEC22AQ96IW7 307 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 LINC00615Q96LM1 132 aaPredicted RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 SLC6A17Q9H1V8 727 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 SYNDIG1Q9H7V2 258 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 TREM1Q9NP99 234 aa11.62□□□□□ -0.55
LIG1-221ENST00000613670 EXOGQ9Y2C4 368 aaKnown RBP11.62□□□□□ -0.55
LIG1-221ENST00000613670 H7C2Y5 167 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 NDUFS1P28331 727 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 EIF1AXP47813 144 aaKnown RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 DPTQ07507 201 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 CDK5R1Q15078 307 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 LINC00303Q3SY05 128 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 GRAMD2AQ8IUY3 354 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 INO80EQ8NBZ0 244 aaPredicted RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 OR51D1Q8NGF3 324 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 C15orf40Q8WUR7 153 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ZNF296Q8WUU4 475 aaPredicted RBP11.61□□□□□ -0.55
LIG1-221ENST00000613670 Q96M85 177 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 SERINC2Q96SA4 455 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 MEIKINA0A087WXM9 373 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 CDK2P24941 298 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 AQP2P41181 271 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 BDH1Q02338 343 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 CLLU1Q5K131 121 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 FAM122CQ6P4D5 195 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ADAMTSL4Q6UY14 1074 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 NHLRC1Q6VVB1 395 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 GALNTL5Q7Z4T8 443 aa11.61□□□□□ -0.55
LIG1-221ENST00000613670 ARIH2OSQ8N7S6 290 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms