RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 RBM4Q9BWF3 364 aaKnown RBP5.49□□□□□ -1.53
CUX1-220ENST00000607092 TAPBPLQ9BX59 468 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 BPESC1Q9GZL8 116 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 QRSL1Q9H0R6 528 aaKnown RBP5.49□□□□□ -1.53
CUX1-220ENST00000607092 MS4A5Q9H3V2 200 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 ARMC7Q9H6L4 198 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 CACYBPQ9HB71 228 aaKnown RBP5.49□□□□□ -1.53
CUX1-220ENST00000607092 DYNLRB1Q9NP97 96 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 MED4Q9NPJ6 270 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 CTPS2Q9NRF8 586 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 SLC7A10Q9NS82 523 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 FBXL3Q9UKT7 428 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 MOKQ9UQ07 419 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 SPEF1Q9Y4P9 236 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 DNAJC15Q9Y5T4 150 aa5.49□□□□□ -1.53
CUX1-220ENST00000607092 ARFGEF3Q5TH69 2177 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 RNF103-CHMP3A0A140T963 221 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 RNASET2O00584 256 aaKnown RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 PIP5K1BO14986 540 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 STAMBPO95630 424 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 C6orf47O95873 294 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR4A8P0C604 315 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 IFNGR1P15260 489 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 UQCRC2P22695 453 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 CXCR1P25024 350 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 GCAP28676 217 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 LSP1P33241 339 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 RYKP34925 604 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 ARR3P36575 388 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 PGM1P36871 562 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 CDH15P55291 814 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 RPS23P62266 143 aaKnown RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 ACTG1P63261 375 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 KCNJ10P78508 379 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 GABPB1Q06547 395 aaPredicted RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 SPOCK1Q08629 439 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 PTGR1Q14914 329 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 MST1LQ2TV78 715 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 SLC9B1Q4ZJI4 515 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 HSP90B2PQ58FF3 399 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 C6orf136Q5SQH8 315 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OTUD3Q5T2D3 398 aaPredicted RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 TSPO2Q5TGU0 170 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 ANKRD16Q6P6B7 361 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 USP43Q70EL4 1123 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 AAED1Q7RTV5 226 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 GOLGA6L1Q8N7Z2 621 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR7A2PQ8NGA2 310 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR9K2Q8NGE7 335 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR8J2Q8NGG1 315 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR52E4Q8NGH9 312 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 OR2T11Q8NH01 316 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 UBASH3BQ8TF42 649 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 HTRA1Q92743 480 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 C1orf159Q96HA4 380 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 HSH2DQ96JZ2 352 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 C1QTNF6Q9BXI9 259 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 PLA2G12AQ9BZM1 189 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 DPY30Q9C005 99 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 DENND2DQ9H6A0 471 aaPredicted RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 ASIC5Q9NY37 505 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 NOP53Q9NZM5 478 aaKnown RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 CRNNQ9UBG3 495 aaPredicted RBP5.48□□□□□ -1.53
CUX1-220ENST00000607092 TBK1Q9UHD2 729 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 GPR160Q9UJ42 338 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 MKLN1Q9UL63 735 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 EMCNQ9ULC0 261 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 RASD1Q9Y272 281 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 FIS1Q9Y3D6 152 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 CMAHPQ9Y471 501 aa5.48□□□□□ -1.53
CUX1-220ENST00000607092 TMED7-TICAM2A0A0A6YYA0 188 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 IGHV1-18A0A0C4DH31 117 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 PRSS51A0A1B0GVH4 220 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 A0A1W2PR80 420 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CFAP73A6NFT4 308 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 AQP7P3A6NL99 342 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 A8MVM7 634 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 FAM157AC9JC47 383 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 hCG_2039718K7EN88 272 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 FCMRO60667 390 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 PEX11AO75192 247 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 IGKV3-15P01624 115 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 DBIP07108 87 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 NUDT17P0C025 328 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CREB1P16220 341 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 IL7RP16871 459 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 ITGA2P17301 1181 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 KRT4P19013 534 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 EDNRAP25101 427 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CFPP27918 469 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 GTF2E2P29084 291 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 CHI3L1P36222 383 aaPredicted RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 IDH2P48735 452 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 IDH3AP50213 366 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 CLNS1AP54105 237 aaKnown RBP5.47□□□□□ -1.53
CUX1-220ENST00000607092 CLDN8P56748 225 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 TMEM33P57088 247 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 SELENOVP59797 346 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 HBA1P69905 142 aa5.47□□□□□ -1.53
CUX1-220ENST00000607092 MRPS11P82912 194 aaKnown RBP5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms