RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 DCTN4Q9UJW0 460 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 TRAPPC4Q9Y296 219 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 AMDHD2Q9Y303 409 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 ATP23Q9Y6H3 246 aa10.97□□□□□ -0.65
TRIM28-212ENST00000597995 MALRD1Q5VYJ5 2156 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 A0A1W2PR80 420 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 NDUFS8O00217 210 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ITGA5P08648 1049 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ETFAP13804 333 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 RYKP34925 604 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 MRPL19P49406 292 aaKnown RBP10.96□□□□□ -0.65
TRIM28-212ENST00000597995 IDH3AP50213 366 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 POLR2JP52435 117 aaKnown RBP10.96□□□□□ -0.65
TRIM28-212ENST00000597995 TGFBR3Q03167 851 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ADGRG3Q86Y34 549 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ZNF563Q8TA94 476 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 HTRA1Q92743 480 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 GTF2H4Q92759 462 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ARL5BQ96KC2 179 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 C1QTNF6Q9BXI9 259 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 PAIP1Q9H074 479 aaKnown RBP10.96□□□□□ -0.65
TRIM28-212ENST00000597995 MTHFD2LQ9H903 347 aaPredicted RBP10.96□□□□□ -0.65
TRIM28-212ENST00000597995 TPT1P8Q9HAU6 139 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 SLC52A3Q9NQ40 469 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 EXOSC3Q9NQT5 275 aaKnown RBP10.96□□□□□ -0.65
TRIM28-212ENST00000597995 SLC17A5Q9NRA2 495 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 TMEM181Q9P2C4 612 aa10.96□□□□□ -0.65
TRIM28-212ENST00000597995 ARFGEF3Q5TH69 2177 aa10.96□□□□□ -0.66
TRIM28-212ENST00000597995 DSPPQ9NZW4 1301 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 VWC2LB2RUY7 222 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 EIF1BO60739 113 aaKnown RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 KRT75O95678 551 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 C8BP07358 591 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 TFPTP0C1Z6 253 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 NR2F1P10589 423 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 H2AFXP16104 143 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF16P17020 682 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 HTR3AP46098 478 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 IDH2P48735 452 aaKnown RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 MAP2K6P52564 334 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 FOXG1P55316 489 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 OR2B6P58173 313 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 PRPS1P60891 318 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 TXNL4AP83876 142 aaKnown RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 HPCAP84074 193 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 MRPL2Q5T653 305 aaKnown RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 FAM166AQ6J272 317 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 SLC2A7Q6PXP3 512 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 MSANTD1Q6ZTZ1 278 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 CCDC103Q8IW40 242 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 MSRB3Q8IXL7 192 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 MIER2Q8N344 545 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 ARFGAP2Q8N6H7 521 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 OR52E4Q8NGH9 312 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 PMM1Q92871 262 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 DNAJA3Q96EY1 480 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 BOD1Q96IK1 185 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 RSPO3Q9BXY4 272 aaPredicted RBP10.95□□□□□ -0.66
TRIM28-212ENST00000597995 TCF7L2Q9NQB0 619 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 RLIMQ9NVW2 624 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 UPB1Q9UBR1 384 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 KCNS2Q9ULS6 477 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 SLC9A8Q9Y2E8 581 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 CHST2Q9Y4C5 530 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 PCDHB14Q9Y5E9 798 aa10.95□□□□□ -0.66
TRIM28-212ENST00000597995 ZNF208O43345 1280 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SASH3O75995 380 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 TGDSO95455 350 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 WNT11O96014 354 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 NUDT7P0C024 238 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SRD5A1P18405 259 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 PAX7P23759 505 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 MPGP29372 298 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 ACAA2P42765 397 aaKnown RBP10.94□□□□□ -0.66
TRIM28-212ENST00000597995 PDLIM4P50479 330 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SLC35A1P78382 337 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SWI5Q1ZZU3 235 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 MST1LQ2TV78 715 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 RPS26P11Q5JNZ5 115 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-212ENST00000597995 CASP12Q6UXS9 341 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 VRK2Q86Y07 508 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 CMIPQ8IY22 773 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 C10orf111Q8N326 155 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 LRRC8CQ8TDW0 803 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SLC38A5Q8WUX1 472 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 WDR60Q8WVS4 1066 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 ITCHQ96J02 903 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 NAA11Q9BSU3 229 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-212ENST00000597995 C19orf24Q9BVV8 132 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 OR11A1Q9GZK7 315 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 MYOZ1Q9NP98 299 aaPredicted RBP10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SLC7A10Q9NS82 523 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SLC25A37Q9NYZ2 338 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 SLAMF8Q9P0V8 285 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 OSGIN1Q9UJX0 560 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 FLVCR1Q9Y5Y0 555 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 FKBP7Q9Y680 259 aa10.94□□□□□ -0.66
TRIM28-212ENST00000597995 TMEM72A0PK05 275 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 CDHR4A6H8M9 788 aa10.93□□□□□ -0.66
TRIM28-212ENST00000597995 FAAHO00519 579 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms