RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 RBM34P42696 430 aaKnown RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ARHGDIAP52565 204 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 RAC1P63000 192 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 LSM11P83369 360 aaKnown RBP eCLIP13.45□□□□□ -0.262e-9■□□□□ 10.1
TRIM28-207ENST00000597136 CDSNQ15517 529 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ACSF3Q4G176 576 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF730Q6ZMV8 503 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 STK32CQ86UX6 486 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 HIPK1Q86Z02 1210 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 PM20D2Q8IYS1 436 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 GIPC3Q8TF64 312 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM239Q8WW34 195 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 NRG4Q8WWG1 115 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 DNAJA3Q96EY1 480 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF845Q96IR2 970 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TRIB1Q96RU8 372 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 PDP1Q9P0J1 537 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 STOML1Q9UBI4 398 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 AP4B1Q9Y6B7 739 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 IGKV1D-42A0A075B6H8 117 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 LINC01387J3KSC0 135 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 PDLIM1O00151 329 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TOXO94900 526 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 CCNB2O95067 398 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 GABRA1P14867 456 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 CCNA2P20248 432 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 PTNP21246 168 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 PEX2P28328 305 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 UGT2B15P54855 530 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 CTU2Q2VPK5 515 aaKnown RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM176BQ3YBM2 270 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 OGFRL1Q5TC84 451 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 LPCAT4Q643R3 524 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF770Q6IQ21 691 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TTC33Q6PID6 262 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 B3GNT6Q6ZMB0 384 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 MBOAT2Q6ZWT7 520 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ADGRE4PQ86SQ3 457 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 P3H2Q8IVL5 708 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 RNF113BQ8IZP6 322 aaKnown RBP13.45□□□□□ -0.26
TRIM28-207ENST00000597136 OR4K5Q8NGD3 323 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 ZPLD1Q8TCW7 415 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 EME1Q96AY2 570 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM43Q9BTV4 400 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 C9orf16Q9BUW7 83 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 RASSF4Q9H2L5 321 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 CHRNA9Q9UGM1 479 aa13.45□□□□□ -0.26
TRIM28-207ENST00000597136 CACNA1DQ01668 2161 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 FLNBO75369 2602 aaKnown RBP13.44□□□□□ -0.26
TRIM28-207ENST00000597136 TMEM72A0PK05 275 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 ARRDC5A6NEK1 342 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 CLCA1A8K7I4 914 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 EIF1AYO14602 144 aaKnown RBP13.44□□□□□ -0.26
TRIM28-207ENST00000597136 TNFSF11O14788 317 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 TGM6O95932 706 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 MAP2K6P52564 334 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 EGR4Q05215 589 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 LRRC36Q1X8D7 754 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 OTUD3Q5T2D3 398 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-207ENST00000597136 RRM2BQ7LG56 351 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 CCDC71Q8IV32 467 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-207ENST00000597136 NRMQ8IXM6 262 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 LINC00471Q8N535 108 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 OR10G2Q8NGC3 310 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 OR9Q2Q8NGE9 314 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 ADGRG7Q96K78 797 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 PSD2Q9BQI7 771 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 SLC19A3Q9BZV2 496 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 MEPEQ9NQ76 525 aaPredicted RBP13.44□□□□□ -0.26
TRIM28-207ENST00000597136 SERINC1Q9NRX5 453 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 MED31Q9Y3C7 131 aa13.44□□□□□ -0.26
TRIM28-207ENST00000597136 A0A0G2JNJ9 132 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 A0A1W2PNR3 127 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 SOCS2O14508 198 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 PIP5K1CO60331 668 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 OR10H3O60404 316 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 HOXD4P09016 255 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-207ENST00000597136 ELK4P28324 431 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 PTDSS1P48651 473 aaKnown RBP13.43□□□□□ -0.26
TRIM28-207ENST00000597136 SNCBQ16143 134 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 NSUN5P2Q63ZY6 315 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 ZBTB49Q6ZSB9 765 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 CBR4Q8N4T8 237 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 MEIOBQ8N635 442 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 C9orf106Q8NAJ2 232 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 NAXEQ8NCW5 288 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 PFN4Q8NHR9 129 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 SSC4DQ8WTU2 575 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 ITLN2Q8WWU7 325 aaPredicted RBP13.43□□□□□ -0.26
TRIM28-207ENST00000597136 SDCCAG3Q96C92 435 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 FEVQ99581 238 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 SLC29A1Q99808 456 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 GABARAPL1Q9H0R8 117 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 COQ10BQ9H8M1 238 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 Q9UFV3 132 aa13.43□□□□□ -0.26
TRIM28-207ENST00000597136 ZC3H12DA2A288 527 aaKnown RBP13.42□□□□□ -0.26
TRIM28-207ENST00000597136 A8MVM7 634 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 KPNA4O00629 521 aaPredicted RBP13.42□□□□□ -0.26
TRIM28-207ENST00000597136 ZNF208O43345 1280 aa13.42□□□□□ -0.26
TRIM28-207ENST00000597136 CXCL13O43927 109 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms