RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 SLC38A2Q96QD8 506 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 MFRPQ9BY79 579 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 YTHDF1Q9BYJ9 559 aaKnown RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 OR52D1Q9H346 318 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 PAQR5Q9NXK6 330 aaPredicted RBP13.77□□□□□ -0.21
SS18-215ENST00000580642 ALKBH4Q9NXW9 302 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 B3GNT3Q9Y2A9 372 aa13.77□□□□□ -0.21
SS18-215ENST00000580642 LOC102725191A0A1B0GVB3 256 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 ZC3H12DA2A288 527 aaKnown RBP13.76□□□□□ -0.21
SS18-215ENST00000580642 NPIPB13A6NJU9 1138 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 LIPT2A6NK58 231 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 NPIPB4C9JG80 1138 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TAF4O00268 1085 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 IMPA2O14732 288 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 ARPC3O15145 178 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TFPIP10646 304 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 PEPDP12955 493 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 CCNA2P20248 432 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 GTF2E2P29084 291 aaKnown RBP13.76□□□□□ -0.21
SS18-215ENST00000580642 UQCRC1P31930 480 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 GRK5P34947 590 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TPD52P55327 224 aaPredicted RBP13.76□□□□□ -0.21
SS18-215ENST00000580642 CSNK2BP67870 215 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 SLC35A1P78382 337 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 FHL1Q13642 323 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 GINS1Q14691 196 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 SLC25A30Q5SVS4 291 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 PDSS1Q5T2R2 415 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 KRT80Q6KB66 452 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TMPPEQ6ZT21 453 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 NANOGNBQ7Z5D8 188 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 LNX2Q8N448 690 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 OR13C2Q8NGS9 318 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 FBLIM1Q8WUP2 373 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 KLHL15Q96M94 604 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 ZNF570Q96NI8 536 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 MUS81Q96NY9 551 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TNFRSF13CQ96RJ3 184 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TSSK6Q9BXA6 273 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 MCCC2Q9HCC0 563 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 TBC1D23Q9NUY8 699 aa13.76□□□□□ -0.21
SS18-215ENST00000580642 MED19A0JLT2 244 aaPredicted RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 VAMP5O95183 116 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 SOX14O95416 240 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 IGHG3P01860 377 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 POU1F1P28069 291 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 EPHA2P29317 976 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 CXCR4P61073 352 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 ISL1P61371 349 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 SNRPGP62308 76 aaKnown RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 CXADRP78310 365 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 LTBQ06643 244 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 MYBPHQ13203 477 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 PDK3Q15120 406 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 EMC4Q5J8M3 183 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 H1FNTQ75WM6 255 aaPredicted RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 YRDCQ86U90 279 aaKnown RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 P3H2Q8IVL5 708 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 OR8J1Q8NGP2 316 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 OR51A7Q8NH64 312 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 ABHD17AQ96GS6 310 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 MOGAT1Q96PD6 335 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 NPAS1Q99742 590 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 POLDIP3Q9BY77 421 aaKnown RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 OR11A1Q9GZK7 315 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 EGLN3Q9H6Z9 239 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 NRIP3Q9NQ35 241 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 TIGARQ9NQ88 270 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 PNPLA3Q9NST1 481 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 IMPAD1Q9NX62 359 aa13.75□□□□□ -0.21
SS18-215ENST00000580642 RPH3AQ9Y2J0 694 aaPredicted RBP13.75□□□□□ -0.21
SS18-215ENST00000580642 A0A1W2PNV4 684 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 BHLHE40O14503 412 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 OR6A2O95222 327 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 WISP1O95388 367 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 CRYABP02511 175 aaKnown RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 SFTPCP11686 197 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 ZNF24P17028 368 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 POU3F2P20265 443 aaPredicted RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 IL11P20809 199 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 GRPRP30550 384 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 MAGEA5P43359 124 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 RAC3P60763 192 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 PMS2P3Q13401 168 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 TOP3AQ13472 1001 aaPredicted RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 PGGHGQ32M88 737 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 TMEM176BQ3YBM2 270 aaPredicted RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 ALG10Q5BKT4 473 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 WIPI1Q5MNZ9 446 aaPredicted RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 C1QL3Q5VWW1 255 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 MEDAGQ5VYS4 303 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 SLC6A19Q695T7 634 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 GPR139Q6DWJ6 353 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 ARHGAP11AQ6P4F7 1023 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 PAQR6Q6TCH4 344 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 LRRC17Q8N6Y2 441 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 RBMXL3Q8N7X1 1067 aaKnown RBP13.74□□□□□ -0.21
SS18-215ENST00000580642 RHOXF1Q8NHV9 184 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 NEIL3Q8TAT5 605 aa13.74□□□□□ -0.21
SS18-215ENST00000580642 ZHX1-C8orf76Q96EF9 292 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms