RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TSPAN10Q9H1Z9 355 aaPredicted RBP22.6■■□□□ 1.21
SHMT1-207ENST00000580002 SERINC1Q9NRX5 453 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 CDH10Q9Y6N8 788 aa22.6■■□□□ 1.21
SHMT1-207ENST00000580002 PRRC2CQ9Y520 2896 aaKnown RBP22.6■■□□□ 1.21
SHMT1-207ENST00000580002 BLOC1S5-TXNDC5H3BN57 136 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 HPNP05981 417 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 MYF6P23409 242 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 AQP2P41181 271 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 UCNP55089 124 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 CLDN20P56880 219 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 CDK5Q00535 292 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF691Q5VV52 312 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 DDIT4LQ96D03 193 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 SFXN2Q96NB2 322 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 PIGQQ9BRB3 760 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF71Q9NQZ8 489 aaPredicted RBP22.59■■□□□ 1.21
SHMT1-207ENST00000580002 TNFRSF10DQ9UBN6 386 aa22.59■■□□□ 1.21
SHMT1-207ENST00000580002 AHSA1O95433 338 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 FAM87AP0C7U9 286 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 GRPRP30550 384 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 GGT2P36268 569 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 SELENBP1Q13228 472 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 MED21Q13503 144 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 PDK3Q15120 406 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 HYAL4Q2M3T9 481 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 CTU2Q2VPK5 515 aaKnown RBP22.58■■□□□ 1.21
SHMT1-207ENST00000580002 FAM69AQ5T7M9 428 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 SNRNP27Q8WVK2 155 aaKnown RBP22.58■■□□□ 1.21
SHMT1-207ENST00000580002 LIPHQ8WWY8 451 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 TBC1D23Q9NUY8 699 aa22.58■■□□□ 1.21
SHMT1-207ENST00000580002 MRPS18CQ9Y3D5 142 aaKnown RBP22.58■■□□□ 1.21
SHMT1-207ENST00000580002 ZNF407Q9C0G0 2248 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 MCIDASD6RGH6 385 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 IGF2P01344 180 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 GFRA1P56159 465 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 SMARCD3Q6STE5 483 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 KDM8Q8N371 416 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 MARVELD2Q8N4S9 558 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 FAM81AQ8TBF8 368 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 TAAR6Q96RI8 345 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 RASSF1Q9NS23 344 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF226Q9NYT6 803 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 LRCH1Q9Y2L9 728 aa22.58■■□□□ 1.2
SHMT1-207ENST00000580002 A0A0J9YW62 118 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 LIPT2A6NK58 231 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 M0R082 166 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNHIT1O43257 154 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF17P17021 662 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 SLC9A3P48764 834 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 SUCLG1P53597 346 aaKnown RBP22.57■■□□□ 1.2
SHMT1-207ENST00000580002 CLDN15P56746 228 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ISL1P61371 349 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 CD47Q08722 323 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 KEAP1Q14145 624 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF169Q14929 603 aaPredicted RBP22.57■■□□□ 1.2
SHMT1-207ENST00000580002 PLEKHN1Q494U1 663 aaPredicted RBP22.57■■□□□ 1.2
SHMT1-207ENST00000580002 SLX4IPQ5VYV7 408 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 LAIR2Q6ISS4 152 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 Q6ZS92 163 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 TRILQ7L0X0 811 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF417Q8TAU3 575 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 TEX47Q8TBZ9 253 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF587Q96SQ5 575 aaPredicted RBP22.57■■□□□ 1.2
SHMT1-207ENST00000580002 POTEKPQ9BYX7 375 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ADNPQ9H2P0 1102 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 TAS2R5Q9NYW4 299 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 B4GALT7Q9UBV7 327 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 RNF6Q9Y252 685 aa22.57■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF814B7Z6K7 855 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 HCN1O60741 890 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 SLC2A10O95528 541 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 F13BP05160 661 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 RPS4XP62701 263 aaKnown RBP22.56■■□□□ 1.2
SHMT1-207ENST00000580002 ENTHD1Q8IYW4 607 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 CNIH3Q8TBE1 160 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 Q9H521 79 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 FKRPQ9H9S5 495 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 TVP23BQ9NYZ1 205 aa22.56■■□□□ 1.2
SHMT1-207ENST00000580002 AKR7A3O95154 331 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 PPP1R3DO95685 299 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 ELK4P28324 431 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 IDUAP35475 653 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 RAC1P63000 192 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 IL5RAQ01344 420 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 SLC35F1Q5T1Q4 408 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 C12orf73Q69YU5 71 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 BCDIN3DQ7Z5W3 292 aaKnown RBP22.55■■□□□ 1.2
SHMT1-207ENST00000580002 SLC22A16Q86VW1 577 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 UBQLNLQ8IYU4 475 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 LRRC75AQ8NAA5 344 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 MFSD8Q8NHS3 518 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 TM9SF4Q92544 642 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 OSTF1Q92882 214 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 ZNF229Q9UJW7 825 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 EIF4E1BA6NMX2 242 aaKnown RBP22.55■■□□□ 1.2
SHMT1-207ENST00000580002 BHLHE40O14503 412 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 RCBTB2O95199 551 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 RPSAP08865 295 aaKnown RBP22.55■■□□□ 1.2
SHMT1-207ENST00000580002 UQCRC1P31930 480 aa22.55■■□□□ 1.2
SHMT1-207ENST00000580002 RPL18Q07020 188 aaKnown RBP22.55■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms