RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 Q8N9G6 341 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 OR4M2Q8NGB6 313 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 OR14A16Q8NHC5 309 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 PTPMT1Q8WUK0 201 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 CAPSLQ8WWF8 208 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 OIT3Q8WWZ8 545 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SNX18Q96RF0 628 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 UCN2Q96RP3 112 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 GPX7Q96SL4 187 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 NMNAT3Q96T66 252 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 NMNAT2Q9BZQ4 307 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 CHRDQ9H2X0 955 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 TP63Q9H3D4 680 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 LMAN1LQ9HAT1 526 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 UBQLN4Q9NRR5 601 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 LANCL2Q9NS86 450 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 PRELID1Q9Y255 219 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 EYSQ5T1H1 3165 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 TRAV1-2A0A0B4J238 106 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 A0A1W2PRG6 482 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 OR6C68A6NDL8 312 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 A8MV72 311 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 MAGEB4O15481 346 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 IDH3BO43837 385 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 PRKNO60260 465 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 IGF2P01344 180 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 GSTT2P0CG29 244 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 GSTT2BP0CG30 244 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 PSKH1P11801 424 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 NPR2P20594 1047 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 RBMS1P29558 406 aaKnown RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 HOXD12P35452 270 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 TALDO1P37837 337 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 NAA10P41227 235 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 GBX2P52951 348 aaPredicted RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 PRPS1P60891 318 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 GRM7Q14831 915 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 CDK5R1Q15078 307 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 CD226Q15762 336 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 ZFP69Q49AA0 526 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SLC35D3Q5M8T2 416 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 WBP2NLQ6ICG8 309 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 PAMR1Q6UXH9 720 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 BTN2A1Q7KYR7 527 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SLC35F2Q8IXU6 374 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 OR4M1Q8NGD0 313 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 OR13C5Q8NGS8 318 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 THAP4Q8WY91 577 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 SMIM19Q96E16 107 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 TTTY10Q9BZA0 68 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 RAB33BQ9H082 229 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.22□□□□□ -0.93
VPS53-220ENST00000576149 DDX28Q9NUL7 540 aaKnown RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 EPHA6Q9UF33 1036 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 NUFIP1Q9UHK0 495 aaKnown RBP9.22□□□□□ -0.93
VPS53-220ENST00000576149 GMEB2Q9UKD1 530 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 NPFFR2Q9Y5X5 522 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 CLCA3PQ9Y6N3 262 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 MAU2Q9Y6X3 613 aa9.22□□□□□ -0.93
VPS53-220ENST00000576149 FAM240BA0A1B0GVZ2 78 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ELOA3DA6NLF2 546 aaPredicted RBP9.21□□□□□ -0.93
VPS53-220ENST00000576149 IMPA2O14732 288 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ZNF254O75437 659 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 CD1AP06126 327 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 PNMTP11086 282 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 SPI1P17947 270 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 MAOBP27338 520 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 PPICP45877 212 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 INPP1P49441 399 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 GDI2P50395 445 aaKnown RBP9.21□□□□□ -0.93
VPS53-220ENST00000576149 SLC37A1P57057 533 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ERVK-25P63136 954 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 SIRPAP78324 504 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 SLC25A35Q3KQZ1 300 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ELOA3BQ3SY89 546 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 GXYLT1Q4G148 440 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ATG4DQ86TL0 474 aaPredicted RBP9.21□□□□□ -0.93
VPS53-220ENST00000576149 GLCCI1Q86VQ1 547 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 SLITRK4Q8IW52 837 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ZNF321PQ8N8H1 164 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 GATSQ8NAP1 163 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ZNF527Q8NB42 609 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ELOA3Q8NG57 546 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 ZPLD1Q8TCW7 415 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 SNX33Q8WV41 574 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 TP53INP1Q96A56 240 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 KLHL1Q9NR64 748 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 NLKQ9UBE8 527 aa9.21□□□□□ -0.93
VPS53-220ENST00000576149 KNL1Q8NG31 2342 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 CENPXA8MT69 81 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 H3BMH7 237 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 AGRPO00253 132 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 RGS13O14921 159 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 OIP5O43482 229 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 UBL4AP11441 157 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 RAB3BP20337 219 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 ALAS2P22557 587 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 PITPNBP48739 271 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 CLDN20P56880 219 aa9.21□□□□□ -0.94
VPS53-220ENST00000576149 RPS11P62280 158 aaKnown RBP eCLIP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms