RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CCL11P51671 97 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 MAPK12P53778 367 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 GFERP55789 205 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CSNK2A1P68400 391 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 FGL1Q08830 312 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ASPHQ12797 758 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 PDIA2Q13087 525 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 KIR2DS3Q14952 304 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 WHAMMP3Q1A5X7 153 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZNF658BQ4V348 819 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 FAM76BQ5HYJ3 339 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZNF311Q5JNZ3 666 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CLEC6AQ6EIG7 209 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ASPHD2Q6ICH7 369 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 DUS1LQ6P1R4 473 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 C19orf48Q6RUI8 117 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZNF517Q6ZMY9 492 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 EIF3MQ7L2H7 374 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 C16orf62Q7Z3J2 963 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 LUZP2Q86TE4 346 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 DSELQ8IZU8 1212 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ANKFN1Q8N957 763 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZNF565Q8N9K5 539 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 CSNK2A3Q8NEV1 391 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 OR5AR1Q8NGP9 310 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 OR2AJ1Q8NGZ0 328 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 KCNG3Q8TAE7 436 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 GIPC3Q8TF64 312 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 PYROXD1Q8WU10 500 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 NAT14Q8WUY8 206 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 OTULINQ96BN8 352 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 COQ2Q96H96 371 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 BIRC8Q96P09 236 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZNF347Q96SE7 839 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 MAP3K3Q99759 626 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 KCNS3Q9BQ31 491 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 FNDC11Q9BVV2 318 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ULBP3Q9BZM4 244 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 VCX3BQ9H321 246 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 DPAGT1Q9H3H5 408 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 SDHAF3Q9NRP4 125 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ACOXLQ9NUZ1 547 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 MRPL22Q9NWU5 206 aaKnown RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 TAS2R13Q9NYV9 303 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 PDP1Q9P0J1 537 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 POMT2Q9UKY4 750 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 B9D1Q9UPM9 204 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 SNX24Q9Y343 169 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 KMT2BQ9UMN6 2715 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 RP1L1Q8IWN7 2480 aaPredicted RBP5.5□□□□□ -1.53
VPS53-212ENST00000572259 LAMA5O15230 3695 aa5.5□□□□□ -1.53
VPS53-212ENST00000572259 ZFYVE26Q68DK2 2539 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CHD6Q8TD26 2715 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 TRAV26-1A0A087WT03 109 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 TRAV25A0A0B4J276 109 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 IGHV5-51A0A0C4DH38 117 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 MS4A18H0YCH9 400 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 LSM1O15116 133 aaKnown RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 SLC16A5O15375 505 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 RAD1O60671 282 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 STK17BO94768 372 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 LYNP07948 512 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 GSTA2P09210 222 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 HIST1H2AGP0C0S8 130 aaPredicted RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 MPC1LP0DKB6 136 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 FGF5P12034 268 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CHATP28329 748 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 RORAP35398 523 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 ELK3P41970 407 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 RAB9AP51151 201 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 KPNA2P52292 529 aaKnown RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 KPNB1Q14974 876 aaKnown RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 NPTX1Q15818 432 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 USF2Q15853 346 aaPredicted RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 SLC5A12Q1EHB4 618 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 C2orf68Q2NKX9 166 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 HKDC1Q2TB90 917 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 KLHL38Q2WGJ6 581 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 ANXA2RQ3ZCQ2 193 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CTSL3PQ5NE16 218 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 RAET1LQ5VY80 246 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 PLCXD3Q63HM9 321 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 SPESP1Q6UW49 350 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 TRMT10CQ7L0Y3 403 aaKnown RBP5.49□□□□□ -1.53
VPS53-212ENST00000572259 ZFAND4Q86XD8 727 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 ZBED8Q8IZ13 594 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 BMPERQ8N8U9 685 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 OR4C5Q8NGB2 326 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 OR5D13Q8NGL4 314 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 OR13F1Q8NGS4 319 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 OR2L8Q8NGY9 312 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 MCOLN3Q8TDD5 553 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CD300LFQ8TDQ1 290 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CERS2Q96G23 380 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 RITA1Q96K30 269 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 ZNF570Q96NI8 536 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 PANX1Q96RD7 426 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CYTH2Q99418 400 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 TRIM51Q9BSJ1 452 aa5.49□□□□□ -1.53
VPS53-212ENST00000572259 CHRNA10Q9GZZ6 450 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms