RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 CRLF3Q8IUI8 442 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CBLN2Q8IUK8 224 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 C10orf107Q8IVU9 208 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FOXRED2Q8IWF2 684 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OFCC1Q8IZS5 231 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GPC2Q8N158 579 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GALNT16Q8N428 558 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CBR4Q8N4T8 237 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 DHRSXQ8N5I4 330 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 LRRC52Q8N7C0 313 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PRELID2Q8N945 189 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 C8orf58Q8NAV2 365 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 AQP11Q8NBQ7 271 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 UXS1Q8NBZ7 420 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 KIAA0895Q8NCT3 520 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR52N4Q8NGI2 321 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR5M8Q8NGP6 311 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR52J3Q8NH60 311 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR51A7Q8NH64 312 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR1S1Q8NH92 325 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OSR1Q8TAX0 266 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 RDH11Q8TC12 318 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CD99L2Q8TCZ2 262 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NPRL2Q8WTW4 380 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SDR42E1Q8WUS8 393 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PCNPQ8WW12 178 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 SELENOMQ8WWX9 145 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RORBQ92753 470 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RPL36ALQ969Q0 106 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 ARRDC3Q96B67 414 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CTHRC1Q96CG8 243 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MALSU1Q96EH3 234 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 FAM120BQ96EK7 910 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 SMIM8Q96KF7 97 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ZNF354BQ96LW1 612 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 C3orf30Q96M34 536 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TMEM56Q96MV1 263 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 RDH12Q96NR8 316 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ERMAPQ96PL5 475 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 ALKBH3Q96Q83 286 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 GAD1Q99259 594 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TSNAXQ99598 290 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 EGFL8Q99944 293 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SLC30A2Q9BRI3 323 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 C7orf50Q9BRJ6 194 aaKnown RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 MECRQ9BV79 373 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SNHG12Q9BXW3 62 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MMP28Q9H239 520 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TPT1P8Q9HAU6 139 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ABCB9Q9NP78 766 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CCNB1IP1Q9NPC3 277 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TRIM36Q9NQ86 728 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GPR173Q9NS66 373 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MAN2C1Q9NTJ4 1040 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MIOSQ9NXC5 875 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MTMR10Q9NXD2 777 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 GTSE1Q9NYZ3 720 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 USE1Q9NZ43 259 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 PAK5Q9P286 719 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ZNF282Q9UDV7 671 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 LEF1Q9UJU2 399 aaPredicted RBP2.98□□□□□ -1.93
VPS35-208ENST00000568612 POMT2Q9UKY4 750 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 CNTN6Q9UQ52 1028 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ATG4BQ9Y4P1 393 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 OR51B4Q9Y5P0 310 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MTCH2Q9Y6C9 303 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 TMEM56-RWDD3S4R434 201 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 V9GYH0 126 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 MON2Q7Z3U7 1717 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 ABCA3Q99758 1704 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 SHANK3Q9BYB0 1731 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 LMO7Q8WWI1 1683 aa2.98□□□□□ -1.93
VPS35-208ENST00000568612 NUP153P49790 1475 aaKnown RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 PEAK1Q9H792 1746 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 DIP2CQ9Y2E4 1556 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 A0A1W2PQL4 384 aaPredicted RBP2.97□□□□□ -1.93
VPS35-208ENST00000568612 TMEM218A2RU14 115 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C7orf66A4D0T2 115 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NKX6-3A6NJ46 265 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 EFCAB9A8MZ26 197 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 C5orf58C9J3I9 102 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FAM86B1E9PN63 330 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 H3BNC9 293 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 GFYI3L273 518 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 M0R296 226 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 LGALS8O00214 317 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 CLIC1O00299 241 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 BHLHE40O14503 412 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 EPHB6O15197 1021 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 FABP7O15540 132 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MBTPS2O43462 519 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 TCF21O43680 179 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SOX15O60248 233 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 NME2P1O60361 137 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 RAMP3O60896 148 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 VPS26AO75436 327 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 OR2J2O76002 312 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 HPRP00739 348 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 SERPINA3P01011 423 aa2.97□□□□□ -1.93
VPS35-208ENST00000568612 MMP1P03956 469 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms