RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 SIAH3Q8IW03 269 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF619Q8N2I2 560 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 HAVCR2Q8TDQ0 301 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 SMPDL3BQ92485 455 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ACTR6Q9GZN1 396 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 DUSP15Q9H1R2 295 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-204ENST00000566354 UCK1Q9HA47 277 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF275Q9NSD4 429 aaPredicted RBP12.18□□□□□ -0.46
VPS4A-204ENST00000566354 UCKL1Q9NWZ5 548 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 MED31Q9Y3C7 131 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 CACNA1EQ15878 2313 aa12.18□□□□□ -0.46
VPS4A-204ENST00000566354 CCDC163A0A0D9SF12 145 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CDHR4A6H8M9 788 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 A6NCN8 305 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 LRRN3E7EW58 273 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 BTN3A3O00478 584 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 HYAL3O43820 417 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 IFNA16P05015 189 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 MRPL3P09001 348 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CD3GP09693 182 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 GKN3PP0CG01 181 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 ZNF888P0CJ79 500 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CXCL3P19876 107 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 SLC2A5P22732 501 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 NDUFS1P28331 727 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 PYCR1P32322 319 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CSNK1EP49674 416 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 POU4F2Q12837 409 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 MRPL2Q5T653 305 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 VN1R4Q7Z5H5 301 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CDH24Q86UP0 819 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 OR11H4Q8NGC9 324 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 GPBAR1Q8TDU6 330 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 PATE1Q8WXA2 126 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 DNASE2BQ8WZ79 361 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 OMA1Q96E52 524 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 LRRN3Q9H3W5 708 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 ZCCHC4Q9H5U6 513 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 KCMF1Q9P0J7 381 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 GMEB2Q9UKD1 530 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 BAIAP2Q9UQB8 552 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CAMK2AQ9UQM7 478 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 KLF2Q9Y5W3 355 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 AUP1Q9Y679 476 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 SNRNP200O75643 2136 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 H2AFB2P0C5Z0 115 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 UGT2B7P16662 529 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 NOS3P29474 1203 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 TLX1P31314 330 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 RPS15AP62244 130 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 GSG1Q2KHT4 349 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 PRRT3Q5FWE3 981 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 RPTNQ6XPR3 784 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 USP53Q70EK8 1073 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 BTN2A1Q7KYR7 527 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 PAQR7Q86WK9 346 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 CMIPQ8IY22 773 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 OR8H3Q8N146 312 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 OR13C2Q8NGS9 318 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 PMEPA1Q969W9 287 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 ZFP3Q96NJ6 502 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 SORCS2Q96PQ0 1159 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 USB1Q9BQ65 265 aaKnown RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 HEXA-AS1Q9H8Q6 139 aa12.17□□□□□ -0.46
VPS4A-204ENST00000566354 TP53BP1Q12888 1972 aaPredicted RBP12.17□□□□□ -0.46
VPS4A-204ENST00000566354 LOC105369274A0A096LPK9 316 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 ATP6V1G2-DDX39BF2Z307 99 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 PTP4A3O75365 173 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 ARL6IP5O75915 188 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 EPXP11678 715 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 CTSEP14091 401 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 DGCR2P98153 550 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 SNTB2Q13425 540 aaKnown RBP12.16□□□□□ -0.46
VPS4A-204ENST00000566354 DYRK1AQ13627 763 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 AMZ1Q400G9 498 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 DCST2Q5T1A1 773 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 FGD2Q7Z6J4 655 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OR4N4Q8N0Y3 316 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 FAM174AQ8TBP5 190 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 NT5CQ8TCD5 201 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 LRRC61Q9BV99 259 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 KIR3DX1Q9H7L2 352 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 GLTPQ9NZD2 209 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OR6C2Q9NZP2 312 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 EIF3KQ9UBQ5 218 aaKnown RBP12.16□□□□□ -0.46
VPS4A-204ENST00000566354 PCOLCE2Q9UKZ9 415 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 C19orf53Q9UNZ5 99 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-204ENST00000566354 MRPS7Q9Y2R9 242 aaKnown RBP12.16□□□□□ -0.46
VPS4A-204ENST00000566354 HEBP2Q9Y5Z4 205 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 COLEC10Q9Y6Z7 277 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 MEIKINA0A087WXM9 373 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 GPR171O14626 319 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 CTDSPLO15194 276 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 ST8SIA5O15466 376 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 OGG1O15527 345 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 FLRT2O43155 660 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 GSTZ1O43708 216 aaPredicted RBP12.16□□□□□ -0.46
VPS4A-204ENST00000566354 SULT1A3P0DMM9 295 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 SULT1A4P0DMN0 295 aa12.16□□□□□ -0.46
VPS4A-204ENST00000566354 ATF1P18846 271 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms