RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ADNPQ9H2P0 1102 aa27.58■■■□□ 2.01
CTCF-203ENST00000566078 AASSQ9UDR5 926 aa27.58■■■□□ 2.01
CTCF-203ENST00000566078 ANKRD11Q6UB99 2663 aaPredicted RBP27.58■■■□□ 2.01
CTCF-203ENST00000566078 RPS4XP62701 263 aaKnown RBP27.57■■■□□ 2
CTCF-203ENST00000566078 PGGHGQ32M88 737 aa27.57■■■□□ 2
CTCF-203ENST00000566078 MAMDC2Q7Z304 686 aaPredicted RBP27.57■■■□□ 2
CTCF-203ENST00000566078 NANOGNBQ7Z5D8 188 aa27.57■■■□□ 2
CTCF-203ENST00000566078 FBLIM1Q8WUP2 373 aa27.57■■■□□ 2
CTCF-203ENST00000566078 TVP23BQ9NYZ1 205 aa27.57■■■□□ 2
CTCF-203ENST00000566078 MRPS18CQ9Y3D5 142 aaKnown RBP27.57■■■□□ 2
CTCF-203ENST00000566078 IGF2RP11717 2491 aa27.57■■■□□ 2
CTCF-203ENST00000566078 FAM166BA8MTA8 275 aa27.56■■■□□ 2
CTCF-203ENST00000566078 OR2T1O43869 369 aa27.56■■■□□ 2
CTCF-203ENST00000566078 NDUFB2O95178 105 aa27.56■■■□□ 2
CTCF-203ENST00000566078 HIST1H2ABP04908 130 aa27.56■■■□□ 2
CTCF-203ENST00000566078 IDUAP35475 653 aa27.56■■■□□ 2
CTCF-203ENST00000566078 SLC6A19Q695T7 634 aa27.56■■■□□ 2
CTCF-203ENST00000566078 HIST3H2AQ7L7L0 130 aa27.56■■■□□ 2
CTCF-203ENST00000566078 PNPLA5Q7Z6Z6 429 aaPredicted RBP27.56■■■□□ 2
CTCF-203ENST00000566078 OR6S1Q8NH40 331 aa27.56■■■□□ 2
CTCF-203ENST00000566078 HIST1H2ACQ93077 130 aa27.56■■■□□ 2
CTCF-203ENST00000566078 IFT27Q9BW83 186 aa27.56■■■□□ 2
CTCF-203ENST00000566078 POTEKPQ9BYX7 375 aa27.56■■■□□ 2
CTCF-203ENST00000566078 ZNF226Q9NYT6 803 aa27.56■■■□□ 2
CTCF-203ENST00000566078 HIF3AQ9Y2N7 669 aa27.56■■■□□ 2
CTCF-203ENST00000566078 OPN1LWP04000 364 aa27.56■■■□□ 2
CTCF-203ENST00000566078 SLC6A6P31641 620 aa27.56■■■□□ 2
CTCF-203ENST00000566078 SFTPDP35247 375 aa27.56■■■□□ 2
CTCF-203ENST00000566078 CD97P48960 835 aa27.56■■■□□ 2
CTCF-203ENST00000566078 TMPRSS3P57727 454 aa27.56■■■□□ 2
CTCF-203ENST00000566078 B3GALT5-AS1P59052 145 aa27.56■■■□□ 2
CTCF-203ENST00000566078 PCDHGA9Q9Y5G4 932 aaKnown RBP27.56■■■□□ 2
CTCF-203ENST00000566078 BLOC1S5-TXNDC5H3BN57 136 aa27.55■■■□□ 2
CTCF-203ENST00000566078 SHC1P29353 583 aa27.55■■■□□ 2
CTCF-203ENST00000566078 CDK5R2Q13319 367 aa27.55■■■□□ 2
CTCF-203ENST00000566078 WIPI1Q5MNZ9 446 aaPredicted RBP27.55■■■□□ 2
CTCF-203ENST00000566078 BORAQ6PGQ7 559 aa27.55■■■□□ 2
CTCF-203ENST00000566078 PTCHD4Q6ZW05 846 aa27.55■■■□□ 2
CTCF-203ENST00000566078 SLC43A2Q8N370 569 aa27.55■■■□□ 2
CTCF-203ENST00000566078 TM9SF4Q92544 642 aa27.55■■■□□ 2
CTCF-203ENST00000566078 TEX12Q9BXU0 123 aa27.55■■■□□ 2
CTCF-203ENST00000566078 PRRG3Q9BZD7 231 aa27.55■■■□□ 2
CTCF-203ENST00000566078 FTCDNL1E5RQL4 147 aa27.54■■■□□ 2
CTCF-203ENST00000566078 BHLHE40O14503 412 aa27.54■■■□□ 2
CTCF-203ENST00000566078 GLSO94925 669 aaPredicted RBP27.54■■■□□ 2
CTCF-203ENST00000566078 IMPDH2P12268 514 aa27.54■■■□□ 2
CTCF-203ENST00000566078 FKBP2P26885 142 aaKnown RBP27.54■■■□□ 2
CTCF-203ENST00000566078 GRPRP30550 384 aa27.54■■■□□ 2
CTCF-203ENST00000566078 AQP2P41181 271 aa27.54■■■□□ 2
CTCF-203ENST00000566078 PRPS1P60891 318 aa27.54■■■□□ 2
CTCF-203ENST00000566078 OR7A5Q15622 319 aa27.54■■■□□ 2
CTCF-203ENST00000566078 IGFN1Q86VF2 1251 aa27.54■■■□□ 2
CTCF-203ENST00000566078 ZFP62Q8NB50 900 aaPredicted RBP27.54■■■□□ 2
CTCF-203ENST00000566078 MOSPD2Q8NHP6 518 aa27.54■■■□□ 2
CTCF-203ENST00000566078 MFSD8Q8NHS3 518 aa27.54■■■□□ 2
CTCF-203ENST00000566078 APH1BQ8WW43 257 aa27.54■■■□□ 2
CTCF-203ENST00000566078 SLC38A2Q96QD8 506 aa27.54■■■□□ 2
CTCF-203ENST00000566078 OR5B2Q96R09 309 aa27.54■■■□□ 2
CTCF-203ENST00000566078 ASPNQ9BXN1 380 aa27.54■■■□□ 2
CTCF-203ENST00000566078 SEC14L4Q9UDX3 406 aa27.54■■■□□ 2
CTCF-203ENST00000566078 TRAV17A0A0B4J275 112 aa27.53■■■□□ 2
CTCF-203ENST00000566078 MCIDASD6RGH6 385 aa27.53■■■□□ 2
CTCF-203ENST00000566078 TNFAIP8O95379 198 aa27.53■■■□□ 2
CTCF-203ENST00000566078 PPP1R3DO95685 299 aa27.53■■■□□ 2
CTCF-203ENST00000566078 LYNP07948 512 aa27.53■■■□□ 2
CTCF-203ENST00000566078 GTF2E2P29084 291 aaKnown RBP27.53■■■□□ 2
CTCF-203ENST00000566078 UQCRC1P31930 480 aa27.53■■■□□ 2
CTCF-203ENST00000566078 UCNP55089 124 aa27.53■■■□□ 2
CTCF-203ENST00000566078 MLLT10P55197 1068 aa27.53■■■□□ 2
CTCF-203ENST00000566078 MYBPHQ13203 477 aa27.53■■■□□ 2
CTCF-203ENST00000566078 ANKDD1AQ495B1 522 aa27.53■■■□□ 2
CTCF-203ENST00000566078 ZADH2Q8N4Q0 377 aa27.53■■■□□ 2
CTCF-203ENST00000566078 TMEM251Q8N6I4 163 aa27.53■■■□□ 2
CTCF-203ENST00000566078 RHOXF1Q8NHV9 184 aa27.53■■■□□ 2
CTCF-203ENST00000566078 SFXN2Q96NB2 322 aa27.53■■■□□ 2
CTCF-203ENST00000566078 TAPBPLQ9BX59 468 aa27.53■■■□□ 2
CTCF-203ENST00000566078 EIF4E1BA6NMX2 242 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 C1QTNF9BB2RNN3 333 aa27.52■■■□□ 2
CTCF-203ENST00000566078 HPNP05981 417 aa27.52■■■□□ 2
CTCF-203ENST00000566078 C1QTNF9P0C862 333 aa27.52■■■□□ 2
CTCF-203ENST00000566078 GABRB1P18505 474 aa27.52■■■□□ 2
CTCF-203ENST00000566078 GRK5P34947 590 aa27.52■■■□□ 2
CTCF-203ENST00000566078 RPL4P36578 427 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 MAGEA5P43359 124 aa27.52■■■□□ 2
CTCF-203ENST00000566078 PCYT1AP49585 367 aa27.52■■■□□ 2
CTCF-203ENST00000566078 CLK1P49759 484 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 C19orf57Q0VDD7 668 aa27.52■■■□□ 2
CTCF-203ENST00000566078 SNAPC1Q16533 368 aa27.52■■■□□ 2
CTCF-203ENST00000566078 TMEM176BQ3YBM2 270 aaPredicted RBP27.52■■■□□ 2
CTCF-203ENST00000566078 C6orf141Q5SZD1 244 aa27.52■■■□□ 2
CTCF-203ENST00000566078 LAIR2Q6ISS4 152 aa27.52■■■□□ 2
CTCF-203ENST00000566078 CCDC103Q8IW40 242 aa27.52■■■□□ 2
CTCF-203ENST00000566078 TCEANCQ8N8B7 351 aa27.52■■■□□ 2
CTCF-203ENST00000566078 OR5J2Q8NH18 312 aa27.52■■■□□ 2
CTCF-203ENST00000566078 SMPDL3BQ92485 455 aa27.52■■■□□ 2
CTCF-203ENST00000566078 IL4I1Q96RQ9 567 aa27.52■■■□□ 2
CTCF-203ENST00000566078 POLDIP3Q9BY77 421 aaKnown RBP27.52■■■□□ 2
CTCF-203ENST00000566078 MYRFQ9Y2G1 1151 aa27.52■■■□□ 2
CTCF-203ENST00000566078 A0A1W2PNR3 127 aa27.52■■■□□ 2
CTCF-203ENST00000566078 LIPT2A6NK58 231 aa27.52■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms