RNA–Protein interactions for RNA: ENST00000564228.5

TCF4-222, Transcript of transcription factor 4, human

TSL 1 (best) BASIC

Gene TCF4, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-222	ENST00000564228	PIN1	Q13526	163 aa	Predicted RBP	10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	RNASE12	Q5GAN4	147 aa	Known RBP	10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	UBE2NL	Q5JXB2	153 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	SLC25A25	Q6KCM7	469 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	COMMD6	Q7Z4G1	85 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	GID4	Q8IVV7	300 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	TMEFF1	Q8IYR6	380 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	TBC1D19	Q8N5T2	526 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	ACBD7	Q8N6N7	88 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	OR10K1	Q8NGX5	313 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	GLYATL2	Q8WU03	294 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	OR1E3	Q8WZA6	343 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	OSTF1	Q92882	214 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	EGLN3	Q9H6Z9	239 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	NOX3	Q9HBY0	568 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	CTPS2	Q9NRF8	586 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	MBD2	Q9UBB5	411 aa		10.2	□□□□□ -0.78
TCF4-222	ENST00000564228	TRAV20	A0A0B4J274	112 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228		A0A0G2JPF8	293 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TRAPPC13	A5PLN9	417 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	HNRNPCL3	B7ZW38	293 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	DISC1	C4P0D8	188 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	GABARAP	H6UMI1	98 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	LAMTOR5	O43504	91 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TMEM127	O75204	238 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	HOXC4	P09017	264 aa	Predicted RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	THEGL	P0DJG4	465 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	HNRNPCL4	P0DMR1	293 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	MGMT	P16455	207 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	MST1	P26927	711 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	RABIF	P47224	123 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	FNTB	P49356	437 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	GDI2	P50395	445 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SST	P61278	116 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	YPEL5	P62699	121 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SIM1	P81133	766 aa	Predicted RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	DCD	P81605	110 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	MRPS10	P82664	201 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SLC25A35	Q3KQZ1	300 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TMEM255A	Q5JRV8	349 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SFRP4	Q6FHJ7	346 aa	Predicted RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	MED27	Q6P2C8	311 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CEACAM19	Q7Z692	300 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SKA3	Q8IX90	412 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SLC22A18AS	Q8N1D0	253 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CADM4	Q8NFZ8	388 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	OR5W2	Q8NH69	310 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ELP5	Q8TE02	316 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TCEAL3	Q969E4	200 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	OR2M4	Q96R27	311 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TSNAX	Q99598	290 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ORAI3	Q9BRQ5	295 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	GSDMC	Q9BYG8	508 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ZNF768	Q9H5H4	540 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CXorf36	Q9H7Y0	433 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	GSN-AS1	Q9NRJ2	163 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TAS2R3	Q9NYW6	316 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	RCE1	Q9Y256	329 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SIRT4	Q9Y6E7	314 aa	Predicted RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	DNAH14	Q0VDD8	3507 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	GOLGA4	Q13439	2230 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	UBE2QL1	A1L167	161 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	EIF1B	O60739	113 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	KRT33A	O76009	404 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CAT	P04040	527 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ATP1B1	P05026	303 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	HEXA	P06865	529 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ACAA1	P09110	424 aa	Predicted RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SLC35G4	P0C7Q5	338 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CD27	P26842	260 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	EIF1	P41567	113 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	AVPI1	Q5T686	147 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	METRNL	Q641Q3	311 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	LRRN1	Q6UXK5	716 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	SPAG16	Q8N0X2	631 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ABHD4	Q8TB40	342 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	OR5P2	Q8WZ92	322 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	KLHDC7B	Q96G42	594 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CAMK1G	Q96NX5	476 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TIMM29	Q9BSF4	260 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	PTDSS2	Q9BVG9	487 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	ALG8	Q9BVK2	526 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	OR52A5	Q9H2C5	316 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	DPEP2	Q9H4A9	486 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	AUNIP	Q9H7T9	357 aa		10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	CACYBP	Q9HB71	228 aa	Known RBP	10.19	□□□□□ -0.78
TCF4-222	ENST00000564228	TMEM131	Q92545	1883 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	FXYD6-FXYD2	A0A087WZ82	144 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228		F5H5P2	479 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	SGCE	O43556	437 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	EIF4E2	O60573	245 aa	Known RBP	10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	TBX19	O60806	448 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	KHDRBS3	O75525	346 aa	Known RBP	10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	EIF3G	O75821	320 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	NDUFB6	O95139	128 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	MT-ND5	P03915	603 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	GLA	P06280	429 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	S100A9	P06702	114 aa	Known RBP	10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	GP1BA	P07359	652 aa		10.18	□□□□□ -0.78
TCF4-222	ENST00000564228	EPX	P11678	715 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 49 ms