RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 CDCP1Q9H5V8 836 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SRD5A3Q9H8P0 318 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TPT1P8Q9HAU6 139 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SMOXQ9NWM0 555 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 MCUBQ9NWR8 336 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 GPR83Q9NYM4 423 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 HAO2Q9NYQ3 351 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PTTG3PQ9NZH4 202 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ZNF224Q9NZL3 707 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 HCN3Q9P1Z3 774 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 CDH22Q9UJ99 828 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ZNF490Q9ULM2 529 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 RAB26Q9ULW5 256 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PRPF19Q9UMS4 504 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 NPIPA1Q9UND3 350 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SSR3Q9UNL2 185 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PIGLQ9Y2B2 252 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 USP47Q96K76 1375 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PTPRTO14522 1441 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PCM1Q15154 2024 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC22A23A1A5C7 686 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 BTN3A3O00478 584 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC16A4O15374 487 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 DHHO43323 396 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SELENOFO60613 162 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 RAD1O60671 282 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 OR2J2O76002 312 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 KRT33AO76009 404 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 MOCS3O95396 460 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 C9P02748 559 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CD5P06127 495 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CRYGBP07316 175 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TSPAN19P0C672 248 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 C1GALT1C1LP0DN25 315 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 UQCRBP14927 111 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CPN1P15169 458 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 MUC1P15941 1255 aaPredicted RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 GOT1P17174 413 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 PGAM1P18669 254 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ANXA7P20073 488 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 KLRK1P26718 216 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 MARK3P27448 753 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 FMO3P31513 532 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 DDOSTP39656 456 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 RFX3P48380 749 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 AGTR2P50052 363 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ZNF84P51523 738 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 NUDT6P53370 316 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 LIMK2P53671 638 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CRYBA4P53673 196 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 DNAJB13P59910 316 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 UFM1P61960 85 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 RAP1AP62834 184 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 FAM3AP98173 230 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 NAAAQ02083 359 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 RBPJQ06330 500 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CD300CQ08708 224 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TWF1Q12792 350 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 BNIP2Q12982 314 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SRSF6Q13247 344 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 FHL1Q13642 323 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 KRT33BQ14525 404 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 GPNMBQ14956 572 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TAF13Q15543 124 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 POU2AF1Q16633 256 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ZNF766Q5HY98 468 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SIRPB2Q5JXA9 342 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 RBM48Q5RL73 367 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 KRTAP5-4Q6L8H1 288 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ASCL4Q6XD76 172 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 KYAT3Q6YP21 454 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC16A13Q7RTY0 426 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC16A9Q7RTY1 509 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 DPY19L4Q7Z388 723 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SCD5Q86SK9 330 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 WDFY1Q8IWB7 410 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 LAS2Q8IYD9 372 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 PGAM4Q8N0Y7 254 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SLC35F6Q8N357 371 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 ZCCHC9Q8N567 271 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 EIF4E3Q8N5X7 224 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 AQP11Q8NBQ7 271 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 KBTBD8Q8NFY9 601 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 OR9A4Q8NGU2 314 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 OR13D1Q8NGV5 346 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 LNX1Q8TBB1 728 aaPredicted RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 M1APQ8TC57 530 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 BLOC1S5Q8TDH9 187 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 PHF10Q8WUB8 498 aaKnown RBP4.62□□□□□ -1.67
VPS35-205ENST00000563984 TMEM239Q8WW34 195 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TCTEX1D2Q8WW35 142 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 S100ZQ8WXG8 99 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TM9SF4Q92544 642 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SNAPC3Q92966 411 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 FAM131CQ96AQ9 280 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 SFRP2Q96HF1 295 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 LRR1Q96L50 414 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 CD180Q99467 661 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 PAAF1Q9BRP4 392 aa4.62□□□□□ -1.67
VPS35-205ENST00000563984 TMEM208Q9BTX3 173 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms