RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 PIGTQ969N2 578 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 MUCL1Q96DR8 90 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 USB1Q9BQ65 265 aaKnown RBP13.82□□□□□ -0.2
VPS39-203ENST00000561797 PARPBPQ9NWS1 579 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 ASB6Q9NWX5 421 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 UPB1Q9UBR1 384 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 SLC13A4Q9UKG4 626 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 AKAP9Q99996 3911 aa13.82□□□□□ -0.2
VPS39-203ENST00000561797 ARID1AO14497 2285 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 A0A1B0GWA3 101 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 AQP7P3A6NL99 342 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 CLOCKO15516 846 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 OPN1SWP03999 348 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 CD3EP07766 207 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 RGS8P57771 180 aaPredicted RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 NCALDP61601 193 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 EGR4Q05215 589 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 FOXD4Q12950 439 aaPredicted RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 AAED1Q7RTV5 226 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 SMYD1Q8NB12 490 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 WFDC11Q8NEX6 87 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 AKAP1Q92667 903 aaKnown RBP eCLIP13.81□□□□□ -0.2
VPS39-203ENST00000561797 KTI12Q96EK9 354 aaPredicted RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 ZNF385AQ96PM9 386 aaKnown RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 WFDC6Q9BQY6 131 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 TMEM204Q9BSN7 226 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 TMUB1Q9BVT8 246 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 SF3B5Q9BWJ5 86 aaKnown RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 TRIM2Q9C040 744 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 PIF1Q9H611 641 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 ESRP2Q9H6T0 727 aaKnown RBP13.81□□□□□ -0.2
VPS39-203ENST00000561797 SLC7A10Q9NS82 523 aa13.81□□□□□ -0.2
VPS39-203ENST00000561797 A0A1W2PR80 420 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 DPRXA6NFQ7 191 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 M0QX08 132 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 HS3ST1O14792 307 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 NPIPB7O75200 414 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 MFN2O95140 757 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 GTF2E2P29084 291 aaKnown RBP13.8□□□□□ -0.2
VPS39-203ENST00000561797 BSPH1Q075Z2 132 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 RBBP4Q09028 425 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 KLF10Q13118 480 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 MMEL1Q495T6 779 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 ALG10BQ5I7T1 473 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 TIMM23BQ5SRD1 257 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 TSPO2Q5TGU0 170 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 SEZ6L2Q6UXD5 910 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 P3H2Q8IVL5 708 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 LSMEM1Q8N8F7 131 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 ZIC4Q8N9L1 334 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 BHLHE22Q8NFJ8 381 aaPredicted RBP13.8□□□□□ -0.2
VPS39-203ENST00000561797 OR52N5Q8NH56 324 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 OR10A6Q8NH74 314 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 MFSD8Q8NHS3 518 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 NEUROG1Q92886 237 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 PIP5K1AQ99755 562 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 KAT8Q9H7Z6 458 aaKnown RBP13.8□□□□□ -0.2
VPS39-203ENST00000561797 TMEM27Q9HBJ8 222 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 TAS2R16Q9NYV7 291 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 MALT1Q9UDY8 824 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 TESQ9UGI8 421 aaKnown RBP13.8□□□□□ -0.2
VPS39-203ENST00000561797 RNF115Q9Y4L5 304 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 CADP27708 2225 aa13.8□□□□□ -0.2
VPS39-203ENST00000561797 OR5H1A6NKK0 313 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 FTCDNL1E5RQL4 147 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 M0R3H8 397 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 ITGA5P08648 1049 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 CBLP22681 906 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 HOXC12P31275 282 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 P2RY4P51582 365 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 PCBP3P57721 371 aaKnown RBP13.79□□□□□ -0.2
VPS39-203ENST00000561797 CYLC2Q14093 348 aaPredicted RBP13.79□□□□□ -0.2
VPS39-203ENST00000561797 OR1Q1Q15612 314 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 TRMT5Q32P41 509 aaKnown RBP13.79□□□□□ -0.2
VPS39-203ENST00000561797 NANOGP8Q6NSW7 305 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 ULK3Q6PHR2 472 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 C6orf89Q6UWU4 347 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 P2RY8Q86VZ1 359 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 KDM8Q8N371 416 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 LILRB1Q8NHL6 650 aaPredicted RBP13.79□□□□□ -0.2
VPS39-203ENST00000561797 DNAJA4Q8WW22 397 aaPredicted RBP13.79□□□□□ -0.2
VPS39-203ENST00000561797 SLC38A4Q969I6 547 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 TMEM45BQ96B21 275 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 SLC47A1Q96FL8 570 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 PERPQ96FX8 193 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 PTDSS2Q9BVG9 487 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 NANOGQ9H9S0 305 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 C12orf10Q9HB07 376 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 SAR1AQ9NR31 198 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 SELENONQ9NZV5 590 aa13.79□□□□□ -0.2
VPS39-203ENST00000561797 LOC100653049A0A140TA62 436 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 MRASO14807 208 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 ARHGEF9O43307 516 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 TPST2O60704 377 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 KRT34O76011 436 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 VAMP5O95183 116 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 PNMTP11086 282 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 CDH2P19022 906 aaPredicted RBP13.78□□□□□ -0.2
VPS39-203ENST00000561797 PTNP21246 168 aa13.78□□□□□ -0.2
VPS39-203ENST00000561797 ZNF83P51522 516 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms