RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 GLULP15104 373 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 CFL1P23528 166 aaKnown RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 CDK2P24941 298 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 ERVK-21P61565 698 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 RPS11P62280 158 aaKnown RBP eCLIP11.34□□□□□ -0.59
LDLR-205ENST00000557933 ERVK-25P63136 954 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 TAGLNQ01995 201 aaKnown RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 RUNX2Q13950 521 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 ELAVL3Q14576 367 aaKnown RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 IRF4Q15306 451 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 DEFB110Q30KQ9 67 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 TMEM69Q5SWH9 247 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 SLC6A19Q695T7 634 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 DMKNQ6E0U4 476 aaPredicted RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 VN1R4Q7Z5H5 301 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 KCTD20Q7Z5Y7 419 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 SLC51BQ86UW2 128 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 RANBP3LQ86VV4 465 aaPredicted RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 LRRC25Q8N386 305 aaPredicted RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 OR51A4Q8NGJ6 313 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 SUSD6Q92537 303 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 CHST6Q9GZX3 395 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 TTYH1Q9H313 450 aaPredicted RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 FLRT3Q9NZU0 649 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 PIPOXQ9P0Z9 390 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 DEC1Q9P2X7 70 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 GPR160Q9UJ42 338 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 POMT2Q9UKY4 750 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 LHX6Q9UPM6 363 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 SLC22A31A6NKX4 558 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 PPM1BO75688 479 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 NFATC1O95644 943 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 ZNF3P17036 446 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 M6PRP20645 277 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 PRKAR1BP31321 381 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 MMP15P51511 669 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 H2BFSP57053 126 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 DCST2Q5T1A1 773 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 MAMSTRQ6ZN01 415 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 DGAT2L6Q6ZPD8 337 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 LNX2Q8N448 690 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 LINC00615Q96LM1 132 aaPredicted RBP11.34□□□□□ -0.59
LDLR-205ENST00000557933 MED31Q9Y3C7 131 aa11.34□□□□□ -0.59
LDLR-205ENST00000557933 hCG_1807616A0A1W2PRN6 198 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 OR5K3A6NET4 321 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 BLOC1S5-TXNDC5H3BN57 136 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SYT5O00445 386 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 VEGFDO43915 354 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SIRPAP78324 504 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SHC2P98077 582 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 PXKQ7Z7A4 578 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 IQCF2Q8IXL9 164 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 CDK20Q8IZL9 346 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 C10orf53Q8N6V4 93 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 LSM14AQ8ND56 463 aaKnown RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 FAM174AQ8TBP5 190 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SMIM4Q8WVI0 70 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 Q96M85 177 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 MTHFD2LQ9H903 347 aaPredicted RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 TAS2R10Q9NYW0 307 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 ZNF230Q9UIE0 474 aaPredicted RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 ZNF223Q9UK11 482 aaPredicted RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 NUP210Q8TEM1 1887 aaPredicted RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 A0A1B0GWA3 101 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SLC22A23A1A5C7 686 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 C17orf51A8MQB3 221 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 GOSR2O14653 212 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 FGF17O60258 216 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 CTSVO60911 334 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 ZFPL1O95159 310 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 CBX7O95931 251 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SRMP19623 302 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 EEF1A1P68104 462 aaKnown RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 DEFA5Q01523 94 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 ACSM1Q08AH1 577 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 ERV3-1Q14264 604 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 CDK5R1Q15078 307 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 ELP2Q6IA86 826 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 FAM199XQ6PEV8 388 aaPredicted RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 TMED4Q7Z7H5 227 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 TMPRSS12Q86WS5 348 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SPPL3Q8TCT6 385 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 LCN9Q8WX39 176 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 CERS4Q9HA82 394 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 SRA1Q9HD15 236 aaKnown RBP11.33□□□□□ -0.6
LDLR-205ENST00000557933 SLC35A3Q9Y2D2 325 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 KIAA1549LQ6ZVL6 1849 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 DMDP11532 3685 aa11.33□□□□□ -0.6
LDLR-205ENST00000557933 RPN2P04844 631 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ATP1B1P05026 303 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 NMBP08949 121 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 PRKACAP17612 351 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ACHEP22303 614 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 DRD3P35462 400 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 CCR4P51679 360 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 EFNB2P52799 333 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 NRG3P56975 720 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 ALG10BQ5I7T1 473 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 OR7E24Q6IFN5 339 aa11.32□□□□□ -0.6
LDLR-205ENST00000557933 NRROSQ86YC3 692 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms